JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYP20A1_chr2_203234018_203311026	0/0	c0005	1389	1	0	0	0	0	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	c0006	1389	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	c0007	1389	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP21A2_chr6_32033415_32046644	0/0	c0001	1488	110	22	20	50	7	11	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0002	1485	51	0	15	33	1	2	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0003	1488	36	9	1	22	0	4	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0004	1488	35	2	2	28	0	3	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0005	1488	33	21	6	5	0	1	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0006	1485	27	1	5	15	2	4	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0007	1488	24	7	2	14	1	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0008	1488	19	8	1	3	2	5	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0009	1488	14	0	2	7	0	5	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0010	1488	11	1	5	4	0	1	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0011	1488	11	11	0	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0012	1488	8	1	4	3	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0013	1488	6	0	0	6	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0014	1485	4	0	1	0	2	1	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/1	c0015	1485	4	0	3	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0016	1488	4	4	0	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0017	1488	4	1	2	0	0	1	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0018	1485	3	0	3	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0019	1485	3	2	1	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0020	1485	3	0	0	1	0	2	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0021	1488	3	0	3	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0022	1485	2	0	0	0	0	2	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0023	1486	2	0	0	1	0	1	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0024	1486	2	0	0	2	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0025	1488	2	0	0	2	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0026	1488	2	0	1	0	1	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0027	1488	2	0	2	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0028	1488	2	1	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0029	1488	2	0	2	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0030	1488	2	2	0	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0031	1485	1	0	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0032	1485	1	0	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0033	1485	1	0	1	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0034	1485	1	0	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0035	1475	1	0	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0036	1485	1	0	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0037	1488	1	0	1	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0038	1488	1	0	0	0	1	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0039	1488	1	0	0	0	0	1	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0040	1488	1	0	0	0	0	1	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0041	1488	1	0	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0042	1489	1	0	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0043	1488	1	0	0	0	0	1	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0044	1488	1	0	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0045	1488	1	0	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0046	1488	1	0	0	0	0	1	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0047	1488	1	1	0	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644