JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYP21A2_chr6_32033415_32046644	0/0	c0048	1488	1	0	0	0	0	1	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0049	1488	1	0	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0050	1488	1	1	0	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0051	1488	1	1	0	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0052	1489	1	0	1	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0053	1489	1	0	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0054	1488	1	1	0	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0055	1488	1	1	0	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0056	1489	1	0	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0057	1488	1	0	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	c0058	1488	1	0	0	0	1	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP24A1_chr20_54148446_54178986	0/1	c0001	1545	97	20	21	41	4	10	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	1/0	c0002	1545	85	17	30	24	2	11	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0003	1545	70	13	12	36	4	5	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0004	1545	59	1	5	47	0	6	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0005	1545	49	11	5	26	0	7	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0006	1545	16	0	3	11	0	2	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0007	1545	12	1	1	10	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0008	1545	10	10	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0009	1545	9	2	2	4	0	1	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0010	1545	7	0	0	7	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0011	1545	6	5	1	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0012	1545	5	5	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0013	1545	4	0	0	0	1	3	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0014	1545	3	0	0	0	0	3	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0015	1545	2	0	0	2	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0016	1545	2	2	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0017	1545	2	1	1	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0018	1545	2	0	0	2	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0019	1545	1	1	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0020	1545	1	0	0	1	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0021	1545	1	0	0	0	1	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0022	1545	1	1	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0023	1545	1	1	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0024	1545	1	0	0	1	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0025	1545	1	0	0	1	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0026	1545	1	0	0	1	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0027	1545	1	1	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0028	1545	1	1	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0029	1545	1	1	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0030	1545	1	1	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0031	1545	1	1	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0032	1545	1	0	1	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0033	1545	1	0	0	0	0	1	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	c0034	1545	1	0	0	0	0	1	copy fasta	CYP24A1	chr20	54148446	54178986
CYP26A1_chr10_93068893_93082885	1/1	c0001	1494	394	78	74	181	14	45	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26A1_chr10_93068893_93082885	0/0	c0002	1494	6	6	0	0	0	0	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26A1_chr10_93068893_93082885	0/0	c0003	1494	6	6	0	0	0	0	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26A1_chr10_93068893_93082885	0/0	c0004	1494	4	4	0	0	0	0	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26A1_chr10_93068893_93082885	0/0	c0005	1494	2	0	2	0	0	0	copy fasta	CYP26A1	chr10	93068893	93082885