JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYP26A1_chr10_93068893_93082885	0/0	c0006	1494	1	1	0	0	0	0	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26A1_chr10_93068893_93082885	0/0	c0007	1494	1	0	1	0	0	0	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26A1_chr10_93068893_93082885	0/0	c0008	1494	1	0	0	0	0	1	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26A1_chr10_93068893_93082885	0/0	c0009	1494	1	0	1	0	0	0	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26A1_chr10_93068893_93082885	0/0	c0010	1494	1	0	0	1	0	0	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26A1_chr10_93068893_93082885	0/0	c0011	1494	1	1	0	0	0	0	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26B1_chr2_72124238_72152862	1/1	c0001	1539	233	61	52	87	11	20	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	c0002	1539	26	13	6	7	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	c0003	1539	21	4	6	4	3	4	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	c0004	1539	7	7	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	c0005	1539	4	0	3	1	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	c0006	1539	4	3	1	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	c0007	1539	3	0	0	3	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	c0008	1539	2	2	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	c0009	1539	2	0	0	2	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	c0010	1539	2	0	0	2	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	c0011	1539	2	2	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	c0012	1539	1	1	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	c0013	1539	1	1	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	c0014	1539	1	1	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	c0015	1539	1	1	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	c0016	1539	1	0	0	1	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	c0017	1539	1	0	0	1	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26C1_chr10_93055798_93074540	1/0	c0001	1569	250	56	34	134	3	22	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/1	c0002	1569	108	16	29	32	12	18	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	c0003	1569	20	7	10	1	1	1	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	c0004	1569	5	5	0	0	0	0	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	c0005	1569	5	5	0	0	0	0	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	c0006	1569	4	4	0	0	0	0	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	c0007	1569	2	2	0	0	0	0	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	c0008	1569	1	0	0	0	0	1	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	c0009	1569	1	0	1	0	0	0	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	c0010	1569	1	1	0	0	0	0	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	c0011	1569	1	0	0	1	0	0	copy fasta	CYP26C1	chr10	93055798	93074540
CYP27A1_chr2_218777147_218820293	1/1	c0001	1596	252	63	50	97	10	30	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	c0002	1596	25	22	3	0	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	c0003	1596	4	0	4	0	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	c0004	1596	3	3	0	0	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	c0005	1596	2	2	0	0	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	c0006	1596	2	2	0	0	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	c0007	1596	2	2	0	0	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	c0008	1596	1	0	0	1	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	c0009	1596	1	0	0	0	0	1	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	c0010	1596	1	1	0	0	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	c0011	1596	1	1	0	0	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	c0012	1596	1	0	1	0	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	c0013	1596	1	0	0	0	0	1	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	c0014	1596	1	1	0	0	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	c0015	1596	1	1	0	0	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27B1_chr12_57757334_57772078	1/1	c0001	1527	340	88	67	135	14	34	copy fasta	CYP27B1	chr12	57757334	57772078