JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYP27B1_chr12_57757334_57772078	0/0	c0002	1527	3	0	0	1	0	2	copy fasta	CYP27B1	chr12	57757334	57772078
CYP27B1_chr12_57757334_57772078	0/0	c0003	1527	3	0	3	0	0	0	copy fasta	CYP27B1	chr12	57757334	57772078
CYP27B1_chr12_57757334_57772078	0/0	c0004	1527	2	2	0	0	0	0	copy fasta	CYP27B1	chr12	57757334	57772078
CYP27B1_chr12_57757334_57772078	0/0	c0005	1527	1	0	0	1	0	0	copy fasta	CYP27B1	chr12	57757334	57772078
CYP27B1_chr12_57757334_57772078	0/0	c0006	1527	1	0	0	1	0	0	copy fasta	CYP27B1	chr12	57757334	57772078
CYP27B1_chr12_57757334_57772078	0/0	c0007	1527	1	0	0	0	0	1	copy fasta	CYP27B1	chr12	57757334	57772078
CYP27B1_chr12_57757334_57772078	0/0	c0008	1527	1	0	0	0	0	1	copy fasta	CYP27B1	chr12	57757334	57772078
CYP27C1_chr2_127178832_127225299	1/0	c0001	1614	240	41	52	112	7	27	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	c0002	1614	75	31	10	17	3	14	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	c0003	1614	8	7	1	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	c0004	1614	7	7	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	c0005	1614	5	0	5	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	c0006	1614	3	3	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	c0007	1614	3	2	0	1	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	c0008	1614	2	2	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	c0009	1614	2	2	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	c0010	1614	1	1	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	c0011	1614	1	0	1	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	c0012	1614	1	0	1	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/1	c0013	1614	1	0	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	c0014	1614	1	1	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	c0015	1614	1	1	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	c0016	1614	1	0	0	0	0	1	copy fasta	CYP27C1	chr2	127178832	127225299
CYP2A13_chr19_41083451_41101195	1/1	c0001	1485	347	53	80	163	10	39	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0002	1485	35	17	3	12	0	3	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0003	1485	6	6	0	0	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0004	1485	5	5	0	0	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0005	1485	4	1	0	0	0	3	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0006	1485	3	1	0	2	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0007	1485	3	3	0	0	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0008	1485	2	2	0	0	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0009	1485	2	1	0	1	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0010	1485	2	1	1	0	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0011	1485	1	0	0	1	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0012	1485	1	0	0	0	0	1	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0013	1485	1	0	0	0	0	1	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0014	1485	1	1	0	0	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0015	1485	1	0	0	0	0	1	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0016	1485	1	0	0	1	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0017	1485	1	1	0	0	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0018	1485	1	1	0	0	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0019	1485	1	0	0	1	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0020	1485	1	1	0	0	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0021	1485	1	1	0	0	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0022	1485	1	0	0	1	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	c0023	1485	1	1	0	0	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A6_chr19_40838541_40855447	0/0	c0000	0	7	0	0	6	0	1	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0001	1485	206	36	55	86	9	20	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0002	1485	43	5	9	14	2	13	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0003	1485	17	0	0	17	0	0	copy fasta	CYP2A6	chr19	40838541	40855447