JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYP2A6_chr19_40838541_40855447	0/0	c0004	1485	10	2	1	1	5	1	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0005	1485	9	9	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0006	1485	8	7	1	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0007	1485	8	6	2	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0008	1485	5	0	0	5	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0009	1485	4	4	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0010	1485	4	0	0	4	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0011	1485	3	3	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0012	1485	3	0	2	0	0	1	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0013	1485	3	3	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0014	1485	3	0	0	3	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0015	1485	3	0	0	3	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0016	1485	3	0	2	0	1	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0017	1485	2	0	0	2	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0018	1485	2	0	1	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0019	1485	2	0	0	0	0	2	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0020	1485	2	0	1	0	0	1	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0021	1485	2	2	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0022	1484	2	2	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0023	1142	2	0	1	0	1	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0024	1485	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0025	1485	1	1	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0026	1485	1	0	1	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0027	1483	1	1	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0028	1483	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0029	1486	1	1	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0030	1486	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0031	1486	1	0	0	0	0	1	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0032	1485	1	1	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0033	1485	1	0	1	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0034	1486	1	0	0	0	0	1	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0035	1484	1	0	1	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0036	1485	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0037	1485	1	1	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0038	1485	1	1	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0039	1486	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0040	1489	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0041	1484	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0042	1485	1	1	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0043	1485	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0044	1485	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0045	1483	1	1	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0046	1485	1	0	0	0	0	1	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0047	1485	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0048	1486	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0049	1485	1	1	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	c0050	1490	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A7_chr19_40870439_40887231	0/0	c0001	1485	104	16	19	44	5	20	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	1/0	c0002	1485	57	2	11	30	3	10	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0003	1485	51	3	7	33	0	8	copy fasta	CYP2A7	chr19	40870439	40887231