JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYP2A7_chr19_40870439_40887231	0/0	c0004	1485	21	0	0	21	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0005	1485	20	8	10	0	0	2	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0006	1485	19	18	1	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0007	1485	16	1	14	0	0	1	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0008	1485	13	13	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0009	1485	12	0	0	12	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0010	1485	11	3	8	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0011	1485	8	8	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/1	c0012	1485	6	0	3	0	2	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0013	1485	6	4	2	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0014	1485	6	2	1	2	0	1	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0015	1485	5	0	1	1	2	1	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0016	1485	4	0	4	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0017	1485	3	0	0	3	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0018	1485	3	0	0	3	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0019	1485	3	0	0	2	0	1	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0020	1485	3	3	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0021	1485	2	2	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0022	1485	2	2	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0023	1485	2	2	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0024	1485	2	0	0	2	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0025	1485	2	0	2	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0026	1485	1	0	0	1	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0027	1485	1	1	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0028	1485	1	1	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0029	1485	1	1	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0030	1485	1	0	0	1	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0031	1485	1	0	1	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0032	1485	1	0	0	1	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0033	1485	1	0	1	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0034	1485	1	0	0	1	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0035	1485	1	1	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0036	1485	1	0	1	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0037	1485	1	0	0	1	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0038	1485	1	1	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0039	1485	1	1	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0040	1485	1	1	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0041	1485	1	1	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	c0042	1485	1	1	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2B6_chr19_40986282_41023398	1/0	c0001	1476	222	43	27	130	8	13	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/1	c0002	1476	127	29	32	43	6	16	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0003	1476	21	0	1	17	0	3	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0004	1476	17	1	7	0	4	5	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0005	1476	12	3	0	8	0	1	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0006	1476	5	0	4	0	0	1	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0007	1476	4	4	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0008	1476	3	0	1	0	0	2	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0009	1476	3	3	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0010	1476	3	3	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0011	1476	2	0	2	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398