JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYP2B6_chr19_40986282_41023398	0/0	c0012	1476	2	2	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0013	1476	2	2	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0014	1476	2	0	0	2	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0015	1476	2	0	0	2	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0016	1476	2	0	0	2	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0017	1476	1	1	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0018	1476	1	1	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0019	1476	1	1	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0020	1476	1	0	0	0	0	1	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0021	1476	1	0	0	1	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0022	1476	1	1	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0023	1476	1	0	0	1	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0024	1476	1	0	1	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0025	1476	1	0	0	1	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0026	1476	1	0	1	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	c0027	1476	1	0	0	1	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2C18_chr10_94678729_94741190	1/1	c0001	1473	236	62	47	85	15	25	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	c0002	1473	85	9	6	56	1	13	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	c0003	1473	20	3	0	13	0	4	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	c0004	1473	9	0	2	7	0	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	c0005	1473	8	8	0	0	0	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	c0006	1473	7	0	3	0	2	2	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	c0007	1473	3	3	0	0	0	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	c0008	1473	2	2	0	0	0	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	c0009	1473	2	0	0	2	0	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	c0010	1473	1	1	0	0	0	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	c0011	1473	1	0	0	1	0	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	c0012	1473	1	0	0	1	0	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	c0013	1473	1	1	0	0	0	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	c0014	1473	1	0	0	1	0	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	c0015	1473	1	1	0	0	0	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C19_chr10_94757681_94860547	0/1	c0001	1473	226	71	42	74	14	24	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	c0002	1473	80	8	5	57	1	9	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	1/0	c0003	1473	19	0	2	12	1	3	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	c0004	1473	17	0	0	13	0	4	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	c0005	1473	4	0	0	0	0	4	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	c0006	1473	3	3	0	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	c0007	1473	3	3	0	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	c0008	1473	2	0	2	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	c0009	1473	2	1	1	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	c0010	1473	1	1	0	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	c0011	1473	1	0	0	1	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	c0012	1473	1	1	0	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	c0013	1473	1	0	0	1	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	c0014	1473	1	0	1	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	c0015	1473	1	1	0	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	c0016	1473	1	1	0	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	c0017	1473	1	0	1	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C8_chr10_95031772_95074497	1/1	c0001	1473	310	51	50	159	13	35	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	c0002	1473	20	20	0	0	0	0	copy fasta	CYP2C8	chr10	95031772	95074497