JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYP2C8_chr10_95031772_95074497	0/0	c0003	1473	17	15	1	0	0	1	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	c0004	1473	9	1	7	0	1	0	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	c0005	1473	6	0	0	6	0	0	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	c0006	1473	5	0	1	0	0	4	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	c0007	1473	2	0	0	0	0	2	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	c0008	1473	1	0	0	0	0	1	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	c0009	1473	1	0	0	1	0	0	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	c0010	1473	1	0	1	0	0	0	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	c0011	1473	1	1	0	0	0	0	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	c0012	1473	1	0	0	1	0	0	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	c0013	1473	1	0	0	1	0	0	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	c0014	1473	1	0	0	0	0	1	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C9_chr10_94933658_94995091	1/1	c0001	1473	320	55	51	154	16	42	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	c0002	1473	16	16	0	0	0	0	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	c0003	1473	12	0	2	6	1	3	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	c0004	1473	9	1	7	0	1	0	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	c0005	1473	5	5	0	0	0	0	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	c0006	1473	4	4	0	0	0	0	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	c0007	1473	2	0	0	2	0	0	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	c0008	1473	2	2	0	0	0	0	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	c0009	1473	1	0	0	1	0	0	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	c0010	1473	1	0	0	0	0	1	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	c0011	1473	1	0	0	1	0	0	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	c0012	1473	1	1	0	0	0	0	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2D6_chr22_42121499_42135810	0/0	c0000	0	24	5	5	11	1	2	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0001	1494	149	24	28	75	4	18	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/1	c0002	1494	75	11	22	25	4	12	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0003	1494	63	5	0	57	0	1	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0004	1494	16	16	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0005	1494	16	1	7	0	5	3	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0006	1494	11	11	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0007	1494	5	1	1	0	3	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0008	1494	5	4	1	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0009	1494	5	0	5	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0010	1494	3	0	0	0	0	3	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0011	1494	3	2	1	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0012	1494	2	2	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0013	1494	2	1	1	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0014	1494	2	0	2	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0015	1494	2	2	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0016	1494	2	0	0	2	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0017	1494	2	0	1	0	0	1	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0018	1494	2	0	0	2	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0019	1494	1	1	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0020	1494	1	0	0	0	0	1	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0021	1494	1	0	0	1	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0022	1494	1	1	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0023	1494	1	1	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0024	1494	1	0	0	0	0	1	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0025	1494	1	0	0	1	0	0	copy fasta	CYP2D6	chr22	42121499	42135810