JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYP2D6_chr22_42121499_42135810	0/0	c0026	1494	1	1	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0027	1494	1	0	1	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0028	1494	1	1	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0029	1494	1	0	1	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0030	1494	1	0	1	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0031	1494	1	0	0	0	0	1	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0032	1494	1	0	0	0	1	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0033	1494	1	0	1	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0034	1494	1	0	1	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0035	1494	1	0	1	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0036	1494	1	1	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0037	1494	1	1	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0038	1494	1	0	1	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0039	1494	1	1	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0040	1494	1	0	1	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0041	1494	1	0	0	0	0	1	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0042	15204	1	0	0	1	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0043	15204	1	0	0	1	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0044	1494	1	1	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0045	15204	1	0	0	1	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	c0046	1494	1	0	0	1	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2E1_chr10_133522363_133544123	1/1	c0001	1482	263	19	49	145	15	33	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	c0002	1482	98	39	10	41	1	7	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	c0003	1482	19	18	1	0	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	c0004	1482	14	14	0	0	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	c0005	1482	5	5	0	0	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	c0006	1482	4	0	0	4	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	c0007	1482	2	1	1	0	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	c0008	1482	1	0	0	1	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	c0009	1482	1	1	0	0	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	c0010	1482	1	1	0	0	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	c0011	1482	1	0	0	1	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	c0012	1482	1	0	1	0	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	c0013	1482	1	0	0	1	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	c0014	1482	1	0	0	1	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	c0015	1482	1	0	0	1	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	c0016	1482	1	0	0	1	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2F1_chr19_41109432_41133381	1/1	c0001	1476	163	16	30	92	9	14	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0002	1477	50	5	10	24	4	7	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0003	1477	26	18	3	5	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0004	1476	21	10	4	0	3	4	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0005	1477	20	17	0	0	0	3	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0006	1476	17	0	12	1	2	2	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0007	1476	16	0	8	5	0	3	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0008	1476	9	0	0	9	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0009	1476	7	7	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0010	1477	5	0	0	1	0	4	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0011	1476	4	4	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0012	1476	4	4	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0013	1476	3	3	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381