JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYP2F1_chr19_41109432_41133381	0/0	c0014	1476	3	0	0	3	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0015	1476	3	0	1	2	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0016	1476	2	2	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0017	1477	2	0	0	2	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0018	1477	2	2	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0019	1477	2	2	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0020	1476	1	1	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0021	1476	1	1	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0022	1476	1	1	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0023	1476	1	1	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0024	1476	1	1	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0025	1476	1	0	0	0	0	1	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0026	1476	1	1	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0027	1476	1	1	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0028	1477	1	0	0	1	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0029	1477	1	1	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0030	1477	1	0	0	0	0	1	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0031	1477	1	0	0	1	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0032	1477	1	0	0	0	0	1	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0033	1477	1	0	0	1	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	c0034	1477	1	0	0	1	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2J2_chr1_59888308_59931773	1/1	c0001	1509	298	65	44	140	14	33	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	c0002	1509	25	0	11	11	2	1	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	c0003	1509	11	0	6	5	0	0	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	c0004	1509	9	9	0	0	0	0	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	c0005	1509	7	0	4	0	0	3	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	c0006	1509	2	0	0	2	0	0	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	c0007	1509	2	2	0	0	0	0	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	c0008	1509	2	2	0	0	0	0	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	c0009	1509	2	0	2	0	0	0	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	c0010	1509	1	0	1	0	0	0	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	c0011	1509	1	0	0	0	0	1	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	c0012	1509	1	0	0	1	0	0	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	c0013	1509	1	1	0	0	0	0	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	c0014	1509	1	1	0	0	0	0	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	c0015	1509	1	0	0	1	0	0	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2R1_chr11_14872440_14897231	1/0	c0001	1506	251	70	31	117	9	23	copy fasta	CYP2R1	chr11	14872440	14897231
CYP2R1_chr11_14872440_14897231	0/1	c0002	1506	145	10	40	73	5	16	copy fasta	CYP2R1	chr11	14872440	14897231
CYP2R1_chr11_14872440_14897231	0/0	c0003	1506	3	3	0	0	0	0	copy fasta	CYP2R1	chr11	14872440	14897231
CYP2R1_chr11_14872440_14897231	0/0	c0004	1506	2	0	1	0	0	1	copy fasta	CYP2R1	chr11	14872440	14897231
CYP2R1_chr11_14872440_14897231	0/0	c0005	1506	1	1	0	0	0	0	copy fasta	CYP2R1	chr11	14872440	14897231
CYP2R1_chr11_14872440_14897231	0/0	c0006	1506	1	1	0	0	0	0	copy fasta	CYP2R1	chr11	14872440	14897231
CYP2R1_chr11_14872440_14897231	0/0	c0007	1506	1	1	0	0	0	0	copy fasta	CYP2R1	chr11	14872440	14897231
CYP2S1_chr19_41188219_41212539	1/1	c0001	1515	304	57	55	139	15	36	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0002	1515	70	14	8	40	1	7	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0003	1515	6	6	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0004	1515	5	0	0	5	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0005	1515	4	0	0	0	0	4	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0006	1515	4	2	2	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0007	1515	4	0	0	4	0	0	copy fasta	CYP2S1	chr19	41188219	41212539