Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAMTS8_chr11_130399923_130433609	0/0	c0046	2670	1	1	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0047	2670	1	0	1	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0048	2673	1	1	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0049	2673	1	1	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS9_chr3_64510654_64693000	1/1	c0001	5808	126	23	19	67	5	10	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0002	5808	36	9	7	20	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0003	5808	21	9	2	10	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0004	5808	9	9	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0005	5808	7	2	4	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0006	5808	7	3	2	0	1	1	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0007	5808	5	5	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0008	5808	5	0	0	5	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0009	5808	5	4	1	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0010	5808	4	0	0	4	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0011	5808	4	0	1	3	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0012	5808	3	0	1	2	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0013	5808	3	3	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0014	5808	3	0	0	3	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0015	5808	2	0	0	2	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0016	5808	2	0	2	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0017	5808	2	2	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0018	5808	2	2	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0019	5808	2	0	0	1	0	1	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0020	5808	2	1	1	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0021	5808	2	0	0	2	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0022	5808	2	2	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0023	5808	1	0	1	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0024	5808	1	0	0	0	0	1	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0025	5808	1	1	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0026	5808	1	1	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0027	5808	1	0	1	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0028	5808	1	1	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0029	5808	1	1	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0030	5808	1	0	0	0	0	1	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0031	5808	1	1	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0032	5808	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0033	5808	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0034	5808	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0035	5808	1	0	1	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0036	5808	1	1	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0037	5808	1	1	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0038	5808	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0039	5808	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0040	5808	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0041	5808	1	0	0	0	0	1	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0042	5808	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0043	5808	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0044	5808	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0045	5808	1	1	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0046	5808	1	0	1	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000