JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYP2S1_chr19_41188219_41212539	0/0	c0008	1515	3	3	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0009	1515	2	2	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0010	1515	2	2	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0011	1515	2	0	2	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0012	1515	1	0	0	1	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0013	1515	1	1	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0014	1515	1	0	1	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0015	1515	1	0	0	1	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0016	1515	1	1	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0017	1515	1	0	1	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0018	1515	1	0	0	1	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0019	1515	1	0	0	1	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0020	1515	1	1	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0021	1515	1	0	0	0	0	1	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0022	1515	1	1	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0023	1515	1	0	1	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0024	1515	1	1	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0025	1515	1	0	0	1	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0026	1515	1	0	0	1	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	c0027	1515	1	1	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2U1_chr4_107926549_107958461	1/1	c0001	1635	368	85	70	153	14	44	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	c0002	1635	8	0	0	8	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	c0003	1635	1	0	1	0	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	c0004	1635	1	0	0	1	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	c0005	1635	1	1	0	0	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	c0006	1635	1	0	1	0	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	c0007	1635	1	1	0	0	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	c0008	1635	1	1	0	0	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2W1_chr7_978181_994640	1/1	c0001	1473	144	33	24	48	10	27	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	c0002	1473	115	29	19	52	4	11	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	c0003	1473	81	4	16	58	1	2	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	c0004	1473	19	3	9	4	1	2	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	c0005	1473	12	0	3	9	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	c0006	1473	12	12	0	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	c0007	1473	6	6	0	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	c0008	1473	2	2	0	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	c0009	1473	2	1	1	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	c0010	1473	2	2	0	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	c0011	1473	2	2	0	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	c0012	1473	1	1	0	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	c0013	1473	1	1	0	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	c0014	1473	1	0	0	1	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	c0015	1473	1	0	0	0	0	1	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	c0016	1473	1	1	0	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	c0017	1473	1	0	0	0	0	1	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	c0018	1473	1	0	0	1	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	c0019	1473	1	0	0	1	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	c0020	1473	1	1	0	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	c0021	1473	1	0	0	1	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	c0022	1473	1	0	0	1	0	0	copy fasta	CYP2W1	chr7	978181	994640