JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYP39A1_chr6_46544580_46657818	0/0	c0001	1410	114	47	9	43	3	12	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	1/0	c0002	1410	100	26	22	37	4	10	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/1	c0003	1410	26	4	6	12	1	2	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/0	c0004	1410	23	12	3	5	0	3	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/0	c0005	1410	22	0	1	19	0	2	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/0	c0006	1410	10	0	2	1	2	5	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/0	c0007	1410	9	0	3	2	0	4	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/0	c0008	1410	3	0	3	0	0	0	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/0	c0009	1410	1	0	0	1	0	0	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/0	c0010	1410	1	0	1	0	0	0	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/0	c0011	1302	1	1	0	0	0	0	copy fasta	CYP39A1	chr6	46544580	46657818
CYP3A43_chr7_99823013_99871093	1/1	c0001	1512	229	18	54	113	9	33	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	c0002	1511	26	21	0	0	2	3	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	c0003	1512	18	13	3	0	1	1	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	c0004	1478	13	12	1	0	0	0	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	c0005	1478	6	6	0	0	0	0	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	c0006	1512	5	4	1	0	0	0	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	c0007	1512	4	4	0	0	0	0	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	c0008	1512	4	0	0	4	0	0	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	c0009	1512	3	0	2	0	0	1	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	c0010	1477	3	3	0	0	0	0	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	c0011	1477	3	3	0	0	0	0	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	c0012	1512	2	2	0	0	0	0	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	c0013	1512	2	0	0	0	0	2	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	c0014	1477	2	1	1	0	0	0	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	c0015	1511	2	2	0	0	0	0	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	c0016	1512	1	0	0	1	0	0	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	c0017	1478	1	1	0	0	0	0	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	c0018	1512	1	0	0	0	0	1	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	c0019	1511	1	0	0	0	0	1	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A4_chr7_99751967_99789184	1/1	c0001	1512	276	78	50	95	9	42	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	c0002	1512	8	5	3	0	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	c0003	1512	4	0	0	4	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	c0004	1512	4	0	0	4	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	c0005	1512	2	2	0	0	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	c0006	1512	2	0	1	0	1	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	c0007	1512	1	1	0	0	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	c0008	1512	1	0	1	0	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	c0009	1512	1	1	0	0	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	c0010	1512	1	0	0	1	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	c0011	1512	1	0	1	0	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	c0012	1512	1	1	0	0	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A5_chr7_99643194_99684996	1/0	c0001	1509	252	62	29	117	6	37	copy fasta	CYP3A5	chr7	99643194	99684996
CYP3A5_chr7_99643194_99684996	0/0	c0002	1509	14	12	2	0	0	0	copy fasta	CYP3A5	chr7	99643194	99684996
CYP3A5_chr7_99643194_99684996	0/0	c0003	1510	14	14	0	0	0	0	copy fasta	CYP3A5	chr7	99643194	99684996
CYP3A5_chr7_99643194_99684996	0/0	c0004	1509	3	3	0	0	0	0	copy fasta	CYP3A5	chr7	99643194	99684996
CYP3A5_chr7_99643194_99684996	0/0	c0005	1509	2	0	1	0	0	1	copy fasta	CYP3A5	chr7	99643194	99684996
CYP3A5_chr7_99643194_99684996	0/1	c0006	1509	2	0	0	0	1	0	copy fasta	CYP3A5	chr7	99643194	99684996
CYP3A5_chr7_99643194_99684996	0/0	c0007	1509	1	0	0	0	1	0	copy fasta	CYP3A5	chr7	99643194	99684996
CYP3A5_chr7_99643194_99684996	0/0	c0008	1122	1	1	0	0	0	0	copy fasta	CYP3A5	chr7	99643194	99684996