JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYP3A5_chr7_99643194_99684996	0/0	c0009	1509	1	0	0	1	0	0	copy fasta	CYP3A5	chr7	99643194	99684996
CYP3A5_chr7_99643194_99684996	0/0	c0010	1509	1	0	0	0	0	1	copy fasta	CYP3A5	chr7	99643194	99684996
CYP3A5_chr7_99643194_99684996	0/0	c0011	1509	1	0	0	0	0	1	copy fasta	CYP3A5	chr7	99643194	99684996
CYP3A7_chr7_99700036_99740196	1/0	c0001	1512	133	26	26	56	7	17	copy fasta	CYP3A7	chr7	99700036	99740196
CYP3A7_chr7_99700036_99740196	0/1	c0002	1512	133	50	9	52	4	17	copy fasta	CYP3A7	chr7	99700036	99740196
CYP3A7_chr7_99700036_99740196	0/0	c0003	1512	13	12	1	0	0	0	copy fasta	CYP3A7	chr7	99700036	99740196
CYP3A7_chr7_99700036_99740196	0/0	c0004	1512	1	0	0	0	1	0	copy fasta	CYP3A7	chr7	99700036	99740196
CYP3A7_chr7_99700036_99740196	0/0	c0005	1512	1	0	0	1	0	0	copy fasta	CYP3A7	chr7	99700036	99740196
CYP3A7_chr7_99700036_99740196	0/0	c0006	1512	1	0	0	1	0	0	copy fasta	CYP3A7	chr7	99700036	99740196
CYP46A1_chr14_99679298_99732301	1/1	c0001	1503	368	96	71	156	16	27	copy fasta	CYP46A1	chr14	99679298	99732301
CYP46A1_chr14_99679298_99732301	0/0	c0002	1503	2	1	1	0	0	0	copy fasta	CYP46A1	chr14	99679298	99732301
CYP46A1_chr14_99679298_99732301	0/0	c0003	1490	1	0	0	1	0	0	copy fasta	CYP46A1	chr14	99679298	99732301
CYP46A1_chr14_99679298_99732301	0/0	c0004	1503	1	0	0	1	0	0	copy fasta	CYP46A1	chr14	99679298	99732301
CYP46A1_chr14_99679298_99732301	0/0	c0005	1503	1	0	0	0	0	1	copy fasta	CYP46A1	chr14	99679298	99732301
CYP46A1_chr14_99679298_99732301	0/0	c0006	1503	1	1	0	0	0	0	copy fasta	CYP46A1	chr14	99679298	99732301
CYP4A11_chr1_46924188_46946476	0/0	c0001	1560	173	27	35	78	7	26	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	c0002	1560	112	28	15	53	2	14	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/1	c0003	1560	74	8	16	46	1	2	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	c0004	1560	16	0	0	15	1	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	1/0	c0005	1560	13	11	1	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	c0006	1560	11	11	0	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	c0007	1560	6	0	0	6	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	c0008	1560	5	5	0	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	c0009	1560	5	0	0	5	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	c0010	1560	2	2	0	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	c0011	1560	2	0	1	0	1	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	c0012	1560	1	1	0	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	c0013	1560	1	0	0	1	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	c0014	1560	1	0	0	1	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	c0015	1560	1	1	0	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	c0016	1560	1	1	0	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	c0017	1560	1	1	0	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	c0018	1560	1	0	0	1	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	c0019	1560	1	0	0	1	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	c0020	1560	1	0	0	1	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A22_chr1_47132441_47154727	0/1	c0001	1560	121	24	18	69	4	5	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0002	1560	85	1	10	67	0	7	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0003	1560	59	1	6	43	0	9	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	1/0	c0004	1560	49	3	29	0	4	12	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0005	1560	36	27	5	0	2	2	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0006	1560	25	7	3	6	1	8	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0007	1559	15	0	0	14	1	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0008	1560	9	0	4	5	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0009	1560	9	9	0	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0010	1560	5	5	0	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0011	1560	4	4	0	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0012	1560	2	2	0	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0013	1560	2	0	0	0	1	1	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0014	1560	2	0	0	2	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0015	1560	2	2	0	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727