JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYP4A22_chr1_47132441_47154727	0/0	c0016	1560	1	1	0	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0017	1560	1	0	0	0	1	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0018	1560	1	1	0	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0019	1560	1	0	0	0	0	1	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0020	1560	1	0	1	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0021	1560	1	1	0	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0022	1560	1	0	0	1	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0023	1560	1	1	0	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0024	1560	1	0	0	1	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0025	1560	1	1	0	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0026	1560	1	0	0	1	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0027	1560	1	0	0	1	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0028	1560	1	0	0	1	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0029	1560	1	0	0	1	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	c0030	1560	1	0	0	0	0	1	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4B1_chr1_46794046_46824413	1/0	c0001	1539	168	22	31	84	9	21	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0002	1539	86	18	10	47	2	9	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/1	c0003	1537	67	5	13	44	1	3	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0004	1539	32	27	5	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0005	1539	7	6	1	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0006	1539	5	5	0	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0007	1539	5	0	0	3	0	2	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0008	1539	5	4	1	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0009	1539	4	0	0	4	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0010	1539	3	3	0	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0011	1539	3	3	0	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0012	1539	2	2	0	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0013	1539	2	0	2	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0014	1539	1	0	0	1	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0015	1539	1	0	0	1	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0016	1539	1	1	0	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0017	1539	1	0	0	1	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0018	1537	1	0	1	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0019	1537	1	0	0	1	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0020	1539	1	0	0	1	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0021	1539	1	1	0	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0022	1539	1	0	0	1	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0023	1539	1	1	0	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	c0024	1539	1	0	0	0	0	1	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4F11_chr19_15907377_15939529	0/0	c0001	1575	144	26	33	59	8	18	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0002	1575	108	0	12	91	0	5	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	1/0	c0003	1575	45	21	9	1	6	7	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/1	c0004	1575	37	7	7	12	4	6	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0005	1575	10	10	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0006	1575	9	6	3	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0007	1575	9	9	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0008	1575	3	3	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0009	1575	2	2	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0010	1575	2	0	1	0	0	1	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0011	1575	2	0	1	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529