JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYP4F11_chr19_15907377_15939529	0/0	c0012	1575	1	0	1	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0013	1575	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0014	1563	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0015	1575	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0016	1575	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0017	1575	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0018	1535	1	0	1	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0019	1575	1	0	0	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0020	1575	1	0	0	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0021	1575	1	0	0	0	0	1	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0022	1575	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0023	1575	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0024	1575	1	0	1	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0025	1575	1	0	1	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	c0026	1575	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F12_chr19_15668087_15702174	0/1	c0001	1575	173	10	35	107	9	11	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0002	1575	119	29	24	46	5	15	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0003	1575	57	27	14	1	1	14	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0004	1575	17	8	6	0	1	2	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0005	1575	7	0	0	7	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0006	1575	6	0	0	6	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0007	1575	6	6	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0008	1575	3	1	0	2	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0009	1575	3	0	0	3	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0010	1575	2	0	0	2	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0011	1575	2	0	0	0	0	2	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0012	1575	1	1	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	1/0	c0013	1575	1	0	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0014	1575	1	1	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0015	1575	1	0	1	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0016	1575	1	0	0	1	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0017	1575	1	0	0	1	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0018	1575	1	1	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0019	1575	1	0	0	1	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0020	1575	1	0	0	1	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0021	1575	1	1	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0022	1575	1	1	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0023	1575	1	1	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0024	1575	1	1	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0025	1575	1	1	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	c0026	1575	1	1	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F22_chr19_15503525_15557317	1/1	c0001	1596	316	55	70	127	18	44	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	c0002	1596	17	5	2	6	0	4	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	c0003	1596	17	17	0	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	c0004	1596	9	9	0	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	c0005	1596	3	3	0	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	c0006	1596	3	3	0	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	c0007	1596	3	1	0	2	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	c0008	1596	3	3	0	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	c0009	1596	2	0	0	2	0	0	copy fasta	CYP4F22	chr19	15503525	15557317