JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYP4F22_chr19_15503525_15557317	0/0	c0010	1596	1	0	1	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	c0011	1596	1	0	1	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	c0012	1596	1	0	0	1	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	c0013	1596	1	0	1	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	c0014	1596	1	0	0	1	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	c0015	1596	1	1	0	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	c0016	1596	1	0	1	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	c0017	1596	1	1	0	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	c0018	1596	1	1	0	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	c0019	1596	1	1	0	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	c0020	1596	1	0	0	1	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F2_chr19_15873023_15903074	0/0	c0000	0	1	0	0	1	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	1/0	c0001	1563	146	22	30	73	6	14	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	c0002	1563	78	7	24	34	7	6	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	c0003	1563	57	3	12	30	2	10	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/1	c0004	1563	29	2	7	9	3	7	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	c0005	1563	14	12	1	0	0	1	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	c0006	1563	12	12	0	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	c0007	1563	10	10	0	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	c0008	1563	9	8	1	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	c0009	1563	7	6	1	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	c0010	1563	2	2	0	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	c0011	1563	2	2	0	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	c0012	1563	2	0	2	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	c0013	1563	1	1	0	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	c0014	1563	1	0	1	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	c0015	1563	1	1	0	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	c0016	1563	1	0	0	0	0	1	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	c0017	1563	1	0	0	1	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	c0018	1563	1	1	0	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	c0019	1563	1	0	0	0	0	1	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	c0020	1563	1	0	0	1	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	c0021	1563	1	1	0	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	c0022	1563	1	0	1	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	c0023	1563	1	0	0	1	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F3_chr19_15635897_15667825	0/0	c0001	1563	174	52	27	84	1	10	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	1/1	c0002	1563	86	17	21	19	9	18	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	c0003	1563	60	8	8	35	3	6	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	c0004	1563	41	8	6	19	0	8	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	c0005	1563	31	3	9	12	2	5	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	c0006	1563	5	0	0	5	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	c0007	1563	4	0	0	4	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	c0008	1563	4	0	0	4	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	c0009	1563	2	2	0	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	c0010	1563	2	1	1	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	c0011	1563	2	2	0	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	c0012	1563	2	0	0	2	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	c0013	1563	1	0	0	1	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	c0014	1563	1	1	0	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	c0015	1563	1	0	1	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825