JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYP4F3_chr19_15635897_15667825	0/0	c0016	1563	1	0	0	0	1	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	c0017	1563	1	1	0	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	c0018	1563	1	0	0	1	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	c0019	1563	1	0	0	0	0	1	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	c0020	1563	1	0	1	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	c0021	1563	1	1	0	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	c0022	1563	1	0	1	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	c0023	1563	1	0	1	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F8_chr19_15610218_15635639	0/0	c0001	1563	148	35	27	75	1	10	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/1	c0002	1563	97	22	15	34	7	18	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	c0003	1563	79	11	22	34	3	9	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	1/0	c0004	1563	46	9	4	22	2	8	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	c0005	1563	23	2	6	10	3	2	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	c0006	1563	5	0	2	0	0	3	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	c0007	1563	4	4	0	0	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	c0008	1563	1	1	0	0	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	c0009	1563	1	1	0	0	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	c0010	1563	1	0	0	1	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	c0011	1563	1	0	0	1	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	c0012	1563	1	1	0	0	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	c0013	1563	1	0	0	1	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	c0014	1563	1	1	0	0	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	c0015	1563	1	1	0	0	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	c0016	1563	1	1	0	0	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	c0017	1563	1	1	0	0	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4V2_chr4_186186567_186218463	0/1	c0001	1578	120	14	18	57	6	24	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0002	1578	73	3	14	55	0	1	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0003	1578	67	11	14	30	4	8	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	1/0	c0004	1578	64	10	11	36	2	4	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0005	1578	50	7	12	25	4	2	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0006	1578	14	5	4	5	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0007	1578	10	7	3	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0008	1578	6	6	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0009	1578	5	5	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0010	1578	5	5	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0011	1578	5	5	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0012	1578	4	4	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0013	1578	4	2	2	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0014	1578	3	0	0	1	0	2	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0015	1578	3	0	1	0	2	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0016	1578	3	0	0	3	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0017	1578	2	0	2	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0018	1578	2	0	0	2	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0019	1578	2	0	0	2	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0020	1578	2	2	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0021	1569	1	0	0	1	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0022	1578	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0023	1578	1	0	0	0	0	1	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0024	1578	1	0	1	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0025	1578	1	0	0	1	0	0	copy fasta	CYP4V2	chr4	186186567	186218463