JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYP4V2_chr4_186186567_186218463	0/0	c0026	1578	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0027	1578	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	c0028	1578	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4X1_chr1_47018669_47055751	1/1	c0001	1530	342	87	69	134	14	36	copy fasta	CYP4X1	chr1	47018669	47055751
CYP4X1_chr1_47018669_47055751	0/0	c0002	1530	2	2	0	0	0	0	copy fasta	CYP4X1	chr1	47018669	47055751
CYP4X1_chr1_47018669_47055751	0/0	c0003	1530	1	1	0	0	0	0	copy fasta	CYP4X1	chr1	47018669	47055751
CYP4X1_chr1_47018669_47055751	0/0	c0004	1530	1	0	0	1	0	0	copy fasta	CYP4X1	chr1	47018669	47055751
CYP4X1_chr1_47018669_47055751	0/0	c0005	1530	1	0	0	1	0	0	copy fasta	CYP4X1	chr1	47018669	47055751
CYP4X1_chr1_47018669_47055751	0/0	c0006	1530	1	0	1	0	0	0	copy fasta	CYP4X1	chr1	47018669	47055751
CYP4X1_chr1_47018669_47055751	0/0	c0007	1530	1	1	0	0	0	0	copy fasta	CYP4X1	chr1	47018669	47055751
CYP4X1_chr1_47018669_47055751	0/0	c0008	1530	1	1	0	0	0	0	copy fasta	CYP4X1	chr1	47018669	47055751
CYP4Z1_chr1_47062231_47123318	0/1	c0001	1518	211	41	36	109	6	18	copy fasta	CYP4Z1	chr1	47062231	47123318
CYP4Z1_chr1_47062231_47123318	1/0	c0002	1518	94	40	34	3	5	11	copy fasta	CYP4Z1	chr1	47062231	47123318
CYP4Z1_chr1_47062231_47123318	0/0	c0003	1518	3	0	0	3	0	0	copy fasta	CYP4Z1	chr1	47062231	47123318
CYP4Z1_chr1_47062231_47123318	0/0	c0004	1518	2	2	0	0	0	0	copy fasta	CYP4Z1	chr1	47062231	47123318
CYP4Z1_chr1_47062231_47123318	0/0	c0005	1518	2	2	0	0	0	0	copy fasta	CYP4Z1	chr1	47062231	47123318
CYP4Z1_chr1_47062231_47123318	0/0	c0006	1518	1	0	0	1	0	0	copy fasta	CYP4Z1	chr1	47062231	47123318
CYP4Z1_chr1_47062231_47123318	0/0	c0007	1518	1	1	0	0	0	0	copy fasta	CYP4Z1	chr1	47062231	47123318
CYP4Z1_chr1_47062231_47123318	0/0	c0008	1518	1	1	0	0	0	0	copy fasta	CYP4Z1	chr1	47062231	47123318
CYP4Z1_chr1_47062231_47123318	0/0	c0009	1518	1	0	0	0	1	0	copy fasta	CYP4Z1	chr1	47062231	47123318
CYP4Z1_chr1_47062231_47123318	0/0	c0010	1518	1	0	0	0	0	1	copy fasta	CYP4Z1	chr1	47062231	47123318
CYP4Z1_chr1_47062231_47123318	0/0	c0011	1518	1	1	0	0	0	0	copy fasta	CYP4Z1	chr1	47062231	47123318
CYP51A1_chr7_92107153_92139477	1/1	c0001	1530	277	49	48	146	6	26	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	c0002	1530	104	39	20	29	4	12	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	c0003	1530	2	0	0	2	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	c0004	1530	2	2	0	0	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	c0005	1530	1	0	0	1	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	c0006	1530	1	1	0	0	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	c0007	1530	1	1	0	0	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	c0008	1530	1	0	0	1	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	c0009	1530	1	1	0	0	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	c0010	1530	1	1	0	0	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	c0011	1530	1	0	0	1	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP7A1_chr8_58485178_58505163	1/1	c0001	1515	420	84	68	202	16	48	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	c0002	1515	16	3	0	13	0	0	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	c0003	1515	5	4	1	0	0	0	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	c0004	1515	4	4	0	0	0	0	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	c0005	1515	4	0	0	4	0	0	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	c0006	1515	3	3	0	0	0	0	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	c0007	1515	2	0	2	0	0	0	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	c0008	1515	1	0	0	1	0	0	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	c0009	1515	1	0	1	0	0	0	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7B1_chr8_64585851_64803737	1/1	c0001	1521	240	64	42	89	11	32	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	c0002	1521	16	14	2	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	c0003	1521	1	0	0	1	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	c0004	1521	1	0	0	0	1	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP8B1_chr3_42867192_42880879	0/1	c0001	1506	317	54	58	152	13	39	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	c0002	1506	23	7	9	0	1	6	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	c0003	1506	12	11	1	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	1/0	c0004	1506	9	7	1	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879