JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYP8B1_chr3_42867192_42880879	0/0	c0005	1506	8	8	0	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	c0006	1506	6	5	1	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	c0007	1506	4	0	0	4	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	c0008	1506	2	0	0	2	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	c0009	1506	1	0	0	1	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	c0010	1506	1	0	0	0	0	1	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	c0011	1506	1	0	1	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	c0012	1506	1	0	0	1	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	c0013	1506	1	0	1	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	c0014	1506	1	1	0	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	c0015	1506	1	1	0	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYREN_chr7_135160785_135175707	1/1	c0001	474	387	76	81	170	12	46	copy fasta	CYREN	chr7	135160785	135175707
CYREN_chr7_135160785_135175707	0/0	c0002	474	14	14	0	0	0	0	copy fasta	CYREN	chr7	135160785	135175707
CYREN_chr7_135160785_135175707	0/0	c0003	474	1	0	0	0	0	1	copy fasta	CYREN	chr7	135160785	135175707
CYREN_chr7_135160785_135175707	0/0	c0004	474	1	0	1	0	0	0	copy fasta	CYREN	chr7	135160785	135175707
CYREN_chr7_135160785_135175707	0/0	c0005	474	1	1	0	0	0	0	copy fasta	CYREN	chr7	135160785	135175707
CYREN_chr7_135160785_135175707	0/0	c0006	474	1	0	0	0	0	1	copy fasta	CYREN	chr7	135160785	135175707
CYREN_chr7_135160785_135175707	0/0	c0007	474	1	1	0	0	0	0	copy fasta	CYREN	chr7	135160785	135175707
CYRIA_chr2_16544459_16670834	1/1	c0001	972	290	94	48	94	16	36	copy fasta	CYRIA	chr2	16544459	16670834
CYRIB_chr8_129834593_130021560	1/1	c0001	975	281	85	57	106	7	24	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	c0002	975	3	0	1	0	1	1	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	c0003	975	3	3	0	0	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	c0004	975	1	0	0	0	0	1	copy fasta	CYRIB	chr8	129834593	130021560
CYS1_chr2_10051473_10085411	1/1	c0001	477	263	59	62	98	15	27	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	c0002	477	70	18	7	36	1	8	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	c0003	477	62	18	6	29	0	9	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	c0004	477	1	1	0	0	0	0	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	c0005	477	1	1	0	0	0	0	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	c0006	477	1	0	1	0	0	0	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	c0007	477	1	0	0	1	0	0	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	c0008	477	1	1	0	0	0	0	copy fasta	CYS1	chr2	10051473	10085411
CYSLTR1_chrX_78266468_78332611	0/0	c0001	1014	129	36	23	46	8	16	copy fasta	CYSLTR1	chrX	78266468	78332611
CYSLTR1_chrX_78266468_78332611	1/0	c0002	1014	105	11	21	62	3	7	copy fasta	CYSLTR1	chrX	78266468	78332611
CYSLTR1_chrX_78266468_78332611	0/0	c0003	1014	2	2	0	0	0	0	copy fasta	CYSLTR1	chrX	78266468	78332611
CYSLTR1_chrX_78266468_78332611	0/0	c0004	1013	1	0	1	0	0	0	copy fasta	CYSLTR1	chrX	78266468	78332611
CYSLTR1_chrX_78266468_78332611	0/0	c0005	1014	1	0	0	1	0	0	copy fasta	CYSLTR1	chrX	78266468	78332611
CYSLTR1_chrX_78266468_78332611	0/0	c0006	1014	1	1	0	0	0	0	copy fasta	CYSLTR1	chrX	78266468	78332611
CYSLTR1_chrX_78266468_78332611	0/0	c0007	1024	1	0	0	1	0	0	copy fasta	CYSLTR1	chrX	78266468	78332611
CYSLTR2_chr13_48648929_48716226	1/1	c0001	1041	279	60	50	126	7	34	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	c0002	1041	10	8	2	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	c0003	1041	7	7	0	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	c0004	1041	6	2	4	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	c0005	1041	3	3	0	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	c0006	1041	2	0	0	2	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	c0007	1041	2	0	0	0	0	2	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	c0008	1041	2	2	0	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	c0009	1041	2	0	0	0	1	1	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	c0010	1041	1	0	0	0	0	1	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	c0011	1041	1	0	1	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	c0012	1041	1	1	0	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226