JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYSLTR2_chr13_48648929_48716226	0/0	c0013	1041	1	0	1	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	c0014	1041	1	1	0	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSRT1_chr9_137220174_137231315	0/1	c0001	435	338	74	75	143	16	29	copy fasta	CYSRT1	chr9	137220174	137231315
CYSRT1_chr9_137220174_137231315	1/0	c0002	435	50	20	6	10	2	11	copy fasta	CYSRT1	chr9	137220174	137231315
CYSRT1_chr9_137220174_137231315	0/0	c0003	435	2	2	0	0	0	0	copy fasta	CYSRT1	chr9	137220174	137231315
CYSRT1_chr9_137220174_137231315	0/0	c0004	435	1	0	1	0	0	0	copy fasta	CYSRT1	chr9	137220174	137231315
CYSRT1_chr9_137220174_137231315	0/0	c0005	435	1	1	0	0	0	0	copy fasta	CYSRT1	chr9	137220174	137231315
CYSRT1_chr9_137220174_137231315	0/0	c0006	435	1	1	0	0	0	0	copy fasta	CYSRT1	chr9	137220174	137231315
CYSRT1_chr9_137220174_137231315	0/0	c0007	435	1	0	0	1	0	0	copy fasta	CYSRT1	chr9	137220174	137231315
CYSTM1_chr5_140170188_140248789	1/1	c0001	294	324	76	58	146	10	32	copy fasta	CYSTM1	chr5	140170188	140248789
CYTH1_chr17_78669048_78787273	1/1	c0001	1197	373	83	60	178	12	38	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	c0002	1197	4	4	0	0	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	c0003	1197	1	1	0	0	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH2_chr19_48464369_48487314	1/1	c0001	1200	338	77	69	148	8	34	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	c0002	1200	23	12	3	7	0	1	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	c0003	1200	1	0	0	1	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	c0004	1200	1	0	0	0	0	1	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	c0005	1200	1	1	0	0	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	c0006	1200	1	0	0	1	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	c0007	1200	1	0	0	1	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH3_chr7_6156779_6277624	0/1	c0001	1200	291	83	48	130	4	25	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	1/0	c0002	1200	54	5	18	21	0	9	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	c0003	1200	2	0	2	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	c0004	1200	1	0	0	1	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH4_chr22_37277508_37320341	0/1	c0001	1185	256	63	44	110	10	28	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	1/0	c0002	1185	125	20	22	70	4	8	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	c0003	1185	7	7	0	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	c0004	1185	6	3	3	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	c0005	1185	2	2	0	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	c0006	1185	2	0	0	1	0	1	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	c0007	1185	1	0	0	1	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	c0008	1185	1	0	0	0	0	1	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	c0009	1185	1	1	0	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	c0010	1185	1	0	1	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	c0011	1185	1	1	0	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	c0012	1185	1	1	0	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTIP_chr2_157409619_157449089	1/1	c0001	1080	305	86	70	92	14	41	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	c0002	1080	7	0	0	6	0	1	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	c0003	1080	3	0	0	2	0	1	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	c0004	1080	1	1	0	0	0	0	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	c0005	1080	1	1	0	0	0	0	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	c0006	1080	1	0	0	1	0	0	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	c0007	1080	1	0	0	1	0	0	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	c0008	1080	1	0	0	0	0	1	copy fasta	CYTIP	chr2	157409619	157449089
CYTL1_chr4_5009586_5024458	1/1	c0001	411	370	64	62	193	13	36	copy fasta	CYTL1	chr4	5009586	5024458
CYTL1_chr4_5009586_5024458	0/0	c0002	411	42	21	8	11	0	2	copy fasta	CYTL1	chr4	5009586	5024458
CYTL1_chr4_5009586_5024458	0/0	c0003	411	19	7	6	0	1	5	copy fasta	CYTL1	chr4	5009586	5024458
CYTL1_chr4_5009586_5024458	0/0	c0004	411	6	4	2	0	0	0	copy fasta	CYTL1	chr4	5009586	5024458
CYTL1_chr4_5009586_5024458	0/0	c0005	411	6	0	5	0	0	1	copy fasta	CYTL1	chr4	5009586	5024458
CYTL1_chr4_5009586_5024458	0/0	c0006	411	3	0	1	0	0	2	copy fasta	CYTL1	chr4	5009586	5024458