Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAMTS9_chr3_64510654_64693000	0/0	c0047	5808	1	1	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0048	5808	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0049	5808	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0050	5808	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0051	5808	1	1	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0052	5808	1	1	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0053	5808	1	1	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	c0054	5808	1	0	0	0	0	1	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTSL1_chr9_18469153_18915950	0/0	c0001	5289	20	6	5	6	0	3	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0002	5289	19	5	2	10	0	2	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0003	5289	16	3	4	5	1	3	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0004	5289	14	2	3	7	0	2	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0005	5289	13	6	2	3	2	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0006	5289	12	4	2	5	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0007	5289	7	1	2	4	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0008	5289	7	1	2	4	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0009	5289	5	0	3	0	2	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0010	5289	5	0	3	2	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0011	5289	4	0	0	4	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0012	5289	4	0	0	4	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0013	5289	3	3	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0014	5289	3	0	2	0	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/1	c0015	5289	3	0	1	0	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0016	5289	3	0	0	2	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0017	5289	3	2	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0018	5289	3	1	0	1	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0019	5289	3	0	0	3	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0020	5289	2	1	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0021	5289	2	0	0	0	0	2	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0022	5289	2	0	0	1	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0023	5289	2	0	0	2	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0024	5289	2	0	1	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0025	5289	2	0	0	0	0	2	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0026	5289	2	0	2	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0027	5289	2	0	1	0	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0028	5289	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0029	5289	1	0	0	0	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0030	5289	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0031	5289	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0032	5289	1	0	0	0	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0033	5289	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0034	5289	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0035	5289	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0036	5289	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0037	5289	1	0	0	0	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0038	5289	1	0	0	0	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0039	5289	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0040	5289	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0041	5289	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0042	5289	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950