JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYYR1_chr21_26461216_26578286	1/1	c0001	468	163	31	37	69	8	16	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	c0002	468	140	48	31	29	10	22	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	c0003	468	6	6	0	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	c0004	468	3	3	0	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	c0005	468	2	0	2	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	c0006	468	1	1	0	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	c0007	468	1	1	0	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CZIB_chr1_53209099_53225634	1/1	c0001	483	396	93	64	181	15	41	copy fasta	CZIB	chr1	53209099	53225634
CZIB_chr1_53209099_53225634	0/0	c0002	483	36	3	8	20	2	3	copy fasta	CZIB	chr1	53209099	53225634
CZIB_chr1_53209099_53225634	0/0	c0003	483	2	0	0	2	0	0	copy fasta	CZIB	chr1	53209099	53225634
CZIB_chr1_53209099_53225634	0/0	c0004	483	1	0	0	0	1	0	copy fasta	CZIB	chr1	53209099	53225634
CZIB_chr1_53209099_53225634	0/0	c0005	483	1	0	0	1	0	0	copy fasta	CZIB	chr1	53209099	53225634
D2HGDH_chr2_241729630_241773811	1/1	c0001	1566	161	24	32	76	6	21	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0002	1566	97	20	21	46	4	6	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0003	1566	39	8	10	14	3	4	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0004	1566	22	5	2	7	1	7	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0005	1566	21	9	2	7	0	3	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0006	1566	12	0	3	9	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0007	1566	7	5	0	2	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0008	1566	6	0	2	1	0	3	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0009	1566	6	6	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0010	1566	3	3	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0011	1566	3	3	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0012	1566	3	3	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0013	1566	3	0	0	3	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0014	1566	3	0	0	3	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0015	1566	3	0	0	3	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0016	1566	2	1	1	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0017	1566	1	1	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0018	1566	1	1	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0019	1566	1	0	0	1	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0020	1566	1	1	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0021	1566	1	1	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0022	1566	1	1	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0023	1566	1	1	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0024	1566	1	1	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0025	1566	1	0	1	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0026	1566	1	0	1	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0027	1566	1	0	0	1	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0028	1566	1	0	0	1	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0029	1566	1	1	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0030	1566	1	0	0	1	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0031	1566	1	0	1	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0032	1566	1	0	1	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0033	1566	1	1	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0034	1566	1	0	0	1	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0035	1553	1	0	0	1	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0036	1566	1	0	1	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	c0037	1566	1	0	0	1	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
DAAM1_chr14_59183667_59376403	1/0	c0001	3207	97	27	31	22	5	11	copy fasta	DAAM1	chr14	59183667	59376403