JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DAAM1_chr14_59183667_59376403	0/1	c0002	3207	91	7	14	43	5	21	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	c0003	3207	83	25	19	30	1	8	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	c0004	3207	8	1	2	2	3	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	c0005	3207	7	6	1	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	c0006	3207	3	3	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	c0007	3207	2	2	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	c0008	3207	2	2	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	c0009	3207	1	0	0	1	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	c0010	3207	1	1	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	c0011	3207	1	0	1	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	c0012	3207	1	1	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	c0013	3207	1	1	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM2_chr6_39787376_39909869	0/1	c0001	3207	94	18	22	30	5	18	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	1/0	c0002	3207	46	9	12	16	1	7	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0003	3207	38	7	9	20	0	2	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0004	3207	29	7	1	19	0	2	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0005	3207	12	6	0	6	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0006	3207	11	8	2	0	0	1	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0007	3207	10	0	0	10	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0008	3207	8	8	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0009	3207	4	4	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0010	3207	4	0	0	3	0	1	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0011	3207	3	3	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0012	3207	3	1	1	1	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0013	3207	2	2	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0014	3207	2	2	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0015	3207	2	0	0	2	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0016	3207	1	0	0	1	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0017	3207	1	0	0	1	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0018	3207	1	0	0	1	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0019	3207	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0020	3207	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0021	3207	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0022	3207	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0023	3207	1	0	1	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0024	3207	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0025	3207	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0026	3207	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0027	3207	1	0	0	1	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0028	3207	1	0	0	1	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0029	3207	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0030	3207	1	0	1	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0031	3207	1	0	1	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0032	3207	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0033	3207	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0034	3207	1	0	0	0	0	1	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0035	3207	1	0	0	1	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0036	3207	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0037	3207	1	0	0	0	0	1	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0038	3207	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869