JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DAAM2_chr6_39787376_39909869	0/0	c0039	3207	1	0	0	1	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0040	3207	1	0	1	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0041	3207	1	0	0	0	0	1	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0042	3207	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0043	3207	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0044	3207	1	0	1	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0045	3207	1	0	0	0	0	1	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0046	3207	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	c0047	3207	1	0	0	0	0	1	copy fasta	DAAM2	chr6	39787376	39909869
DAB1_chr1_56989778_57429060	1/1	c0001	1668	131	65	32	18	2	12	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	c0002	1668	2	2	0	0	0	0	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	c0003	1668	2	2	0	0	0	0	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	c0004	1668	1	1	0	0	0	0	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	c0005	1668	1	0	0	0	0	1	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	c0006	1668	1	0	0	0	0	1	copy fasta	DAB1	chr1	56989778	57429060
DAB2IP_chr9_121646634_121790530	1/1	c0001	3570	154	38	34	59	9	12	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0002	3570	8	0	0	6	0	2	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0003	3570	8	6	0	0	0	2	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0004	3570	8	8	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0005	3570	6	5	1	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0006	3570	5	5	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0007	3570	4	4	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0008	3570	4	0	0	4	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0009	3570	4	4	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0010	3570	4	0	0	4	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0011	3570	3	3	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0012	3570	2	0	2	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0013	3570	2	2	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0014	3570	2	2	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0015	3570	1	1	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0016	3570	1	0	0	0	1	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0017	3570	1	0	0	1	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0018	3570	1	0	0	1	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0019	3570	1	1	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0020	3570	1	0	0	1	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0021	3570	1	1	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0022	3570	1	1	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0023	3570	1	0	1	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	c0024	3570	1	1	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2_chr5_39366677_39429980	1/0	c0001	2313	305	59	60	146	12	27	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/1	c0002	2313	49	3	13	26	0	6	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	c0003	2313	28	21	2	5	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	c0004	2313	6	6	0	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	c0005	2313	5	0	2	0	0	3	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	c0006	2313	4	4	0	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	c0007	2313	4	3	0	1	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	c0008	2313	3	0	0	0	0	3	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	c0009	2313	2	0	0	2	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	c0010	2313	2	2	0	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	c0011	2313	1	0	0	1	0	0	copy fasta	DAB2	chr5	39366677	39429980