JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DAB2_chr5_39366677_39429980	0/0	c0012	2313	1	0	1	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	c0013	2313	1	1	0	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	c0014	2313	1	0	0	1	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	c0015	2313	1	1	0	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	c0016	2313	1	0	0	0	0	1	copy fasta	DAB2	chr5	39366677	39429980
DACH1_chr13_71432966_71872204	1/1	c0001	2121	49	27	8	4	0	8	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	c0002	2127	33	28	2	2	0	1	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	c0003	2118	6	6	0	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	c0004	2133	3	2	1	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	c0005	2121	2	2	0	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	c0006	2121	2	0	2	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	c0007	2127	2	2	0	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	c0008	2124	2	2	0	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	c0009	2121	1	0	0	0	0	1	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	c0010	2127	1	1	0	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	c0011	2127	1	0	1	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH2_chrX_86143451_86837602	0/0	c0001	1800	163	54	23	66	4	16	copy fasta	DACH2	chrX	86143451	86837602
DACH2_chrX_86143451_86837602	0/0	c0002	1800	1	0	0	0	1	0	copy fasta	DACH2	chrX	86143451	86837602
DACH2_chrX_86143451_86837602	0/0	c0003	1800	1	0	0	1	0	0	copy fasta	DACH2	chrX	86143451	86837602
DACH2_chrX_86143451_86837602	0/0	c0004	1800	1	0	0	1	0	0	copy fasta	DACH2	chrX	86143451	86837602
DACT1_chr14_58632962_58653321	0/0	c0001	2400	160	19	20	101	4	16	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0002	2400	91	27	25	31	4	4	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0003	2400	85	12	14	41	3	15	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0004	2400	10	10	0	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0005	2400	8	4	1	0	1	2	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0006	2400	6	5	1	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0007	2400	4	0	0	1	1	2	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0008	2400	3	3	0	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0009	2400	3	3	0	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0010	2400	2	0	0	2	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0011	2400	2	2	0	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0012	2400	2	0	0	2	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0013	2400	1	0	0	0	1	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0014	2400	1	0	0	1	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0015	2400	1	0	0	1	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0016	2400	1	0	1	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0017	2400	1	0	0	0	0	1	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0018	2400	1	1	0	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0019	2400	1	0	0	1	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0020	2400	1	1	0	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0021	2400	1	0	0	1	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0022	2400	1	1	0	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0023	2400	1	1	0	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	c0024	2400	1	1	0	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT2_chr6_168301904_168324777	1/1	c0001	2325	216	20	45	121	12	16	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	c0002	2325	63	5	11	37	3	7	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	c0003	2325	60	21	18	9	2	10	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	c0004	2337	23	0	1	19	0	3	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	c0005	2325	19	0	2	17	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	c0006	2325	15	13	2	0	0	0	copy fasta	DACT2	chr6	168301904	168324777