JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DACT3_chr19_46642551_46666182	0/0	c0016	1890	1	0	1	0	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	c0017	1890	1	0	0	1	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	c0018	1890	1	0	0	1	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	c0019	1890	1	0	1	0	0	0	copy fasta	DACT3	chr19	46642551	46666182
DAD1_chr14_22559907_22594224	1/1	c0001	342	357	65	73	156	15	46	copy fasta	DAD1	chr14	22559907	22594224
DAD1_chr14_22559907_22594224	0/0	c0002	342	29	25	1	0	3	0	copy fasta	DAD1	chr14	22559907	22594224
DAG1_chr3_49465267_49540615	0/1	c0001	2688	145	52	28	31	10	23	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	c0002	2688	61	14	13	19	8	7	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	1/0	c0003	2688	10	9	0	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	c0004	2688	5	5	0	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	c0005	2688	5	0	0	5	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	c0006	2688	2	2	0	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	c0007	2688	2	0	2	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	c0008	2688	2	0	2	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	c0009	2688	1	0	0	1	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	c0010	2688	1	1	0	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	c0011	2688	1	1	0	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	c0012	2688	1	1	0	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	c0013	2688	1	1	0	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	c0014	2688	1	0	1	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAGLA_chr11_61675391_61752001	0/0	c0001	3129	95	18	21	41	3	12	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	c0002	3129	63	5	12	31	3	12	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	c0003	3129	59	13	0	40	1	5	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	1/0	c0004	3129	53	16	19	7	2	8	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/1	c0005	3129	26	5	8	5	4	3	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	c0006	3129	15	13	1	0	0	1	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	c0007	3129	8	7	1	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	c0008	3129	6	5	1	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	c0009	3129	2	0	1	1	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	c0010	3129	2	0	0	0	1	1	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	c0011	3129	1	1	0	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	c0012	3129	1	1	0	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	c0013	3129	1	1	0	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	c0014	3129	1	0	0	1	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	c0015	3129	1	1	0	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	c0016	3129	1	0	0	1	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	c0017	3129	1	0	1	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	c0018	3129	1	1	0	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	c0019	3129	1	0	0	1	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	c0020	3129	1	0	1	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	c0021	3129	1	1	0	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLB_chr7_6404129_6452954	1/1	c0001	2019	151	56	34	27	11	21	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	c0002	2019	84	3	7	65	0	9	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	c0003	2019	58	4	9	39	2	4	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	c0004	2019	26	8	6	10	0	2	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	c0005	2019	23	5	1	13	1	3	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	c0006	2019	6	5	1	0	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	c0007	2019	5	0	5	0	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	c0008	2019	5	5	0	0	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	c0009	2019	5	2	1	2	0	0	copy fasta	DAGLB	chr7	6404129	6452954