JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DAGLB_chr7_6404129_6452954	0/0	c0010	2019	4	4	0	0	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	c0011	2019	3	0	3	0	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	c0012	2019	1	0	1	0	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	c0013	2019	1	1	0	0	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	c0014	2019	1	0	0	0	0	1	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	c0015	2019	1	0	0	1	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	c0016	2019	1	0	0	1	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	c0017	2019	1	0	0	1	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	c0018	2019	1	0	0	1	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	c0019	2019	1	1	0	0	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	c0020	2019	1	0	0	0	0	1	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	c0021	2019	1	0	0	0	0	1	copy fasta	DAGLB	chr7	6404129	6452954
DALRD3_chr3_49010488_49023580	0/1	c0001	1632	227	78	43	67	10	28	copy fasta	DALRD3	chr3	49010488	49023580
DALRD3_chr3_49010488_49023580	1/0	c0002	1632	24	9	5	0	6	3	copy fasta	DALRD3	chr3	49010488	49023580
DALRD3_chr3_49010488_49023580	0/0	c0003	1632	3	0	0	2	0	1	copy fasta	DALRD3	chr3	49010488	49023580
DALRD3_chr3_49010488_49023580	0/0	c0004	1632	1	0	1	0	0	0	copy fasta	DALRD3	chr3	49010488	49023580
DALRD3_chr3_49010488_49023580	0/0	c0005	1632	1	0	0	1	0	0	copy fasta	DALRD3	chr3	49010488	49023580
DALRD3_chr3_49010488_49023580	0/0	c0006	1632	1	1	0	0	0	0	copy fasta	DALRD3	chr3	49010488	49023580
DALRD3_chr3_49010488_49023580	0/0	c0007	1632	1	0	1	0	0	0	copy fasta	DALRD3	chr3	49010488	49023580
DAND5_chr19_12964576_12979760	1/1	c0001	570	395	94	76	159	17	47	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	c0002	570	1	0	0	1	0	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	c0003	570	1	0	0	0	1	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	c0004	570	1	0	0	0	0	1	copy fasta	DAND5	chr19	12964576	12979760
DAOA_chr13_105461045_105496034	1/0	c0001	462	242	88	51	68	7	27	copy fasta	DAOA	chr13	105461045	105496034
DAOA_chr13_105461045_105496034	0/1	c0002	462	162	8	27	102	7	17	copy fasta	DAOA	chr13	105461045	105496034
DAOA_chr13_105461045_105496034	0/0	c0003	462	8	0	0	8	0	0	copy fasta	DAOA	chr13	105461045	105496034
DAO_chr12_108875092_108906043	1/0	c0001	1044	337	61	52	174	16	33	copy fasta	DAO	chr12	108875092	108906043
DAO_chr12_108875092_108906043	0/1	c0002	1044	48	31	10	0	0	6	copy fasta	DAO	chr12	108875092	108906043
DAO_chr12_108875092_108906043	0/0	c0003	1044	1	1	0	0	0	0	copy fasta	DAO	chr12	108875092	108906043
DAO_chr12_108875092_108906043	0/0	c0004	1044	1	0	0	0	0	1	copy fasta	DAO	chr12	108875092	108906043
DAO_chr12_108875092_108906043	0/0	c0005	1044	1	1	0	0	0	0	copy fasta	DAO	chr12	108875092	108906043
DAP3_chr1_155684091_155744010	1/0	c0001	1197	258	78	40	101	9	29	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/1	c0002	1197	18	11	4	0	1	1	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	c0003	1194	11	0	0	9	0	2	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	c0004	1197	1	1	0	0	0	0	copy fasta	DAP3	chr1	155684091	155744010
DAPK1_chr9_87492867_87713634	0/0	c0001	4293	36	3	8	21	1	3	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/1	c0002	4293	33	3	4	16	2	7	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	1/0	c0003	4293	32	14	7	4	3	3	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0004	4293	23	1	7	13	0	2	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0005	4293	22	6	5	6	0	5	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0006	4293	15	3	4	6	2	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0007	4293	10	10	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0008	4293	6	2	2	0	0	2	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0009	4293	6	0	0	6	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0010	4293	5	4	1	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0011	4293	4	4	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0012	4293	3	3	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0013	4293	3	3	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0014	4293	3	3	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0015	4293	3	3	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634