JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DAPK1_chr9_87492867_87713634	0/0	c0016	4293	3	1	1	1	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0017	4293	2	2	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0018	4293	2	2	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0019	4293	2	2	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0020	4293	2	0	0	1	0	1	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0021	4293	1	0	1	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0022	4293	1	1	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0023	4293	1	1	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0024	4293	1	1	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0025	4293	1	0	1	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0026	4293	1	1	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0027	4293	1	1	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0028	4293	1	1	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0029	4293	1	0	0	0	0	1	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0030	4293	1	1	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0031	4293	1	0	0	0	0	1	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0032	4293	1	1	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0033	4293	1	0	1	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0034	4293	1	0	1	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0035	4293	1	1	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0036	4293	1	0	0	0	0	1	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0037	4293	1	0	0	0	1	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0038	4293	1	0	1	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0039	4293	1	0	0	0	1	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0040	4293	1	1	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	c0041	4293	1	1	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK2_chr15_63902036_64051485	1/1	c0001	1113	198	78	46	24	14	34	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	c0002	1113	7	7	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	c0003	1113	4	4	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	c0004	1113	2	0	0	0	0	2	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	c0005	1113	1	1	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	c0006	1113	1	0	0	1	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	c0007	1113	1	0	0	1	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK3_chr19_3953453_3976099	1/1	c0001	1365	351	81	81	129	16	42	copy fasta	DAPK3	chr19	3953453	3976099
DAPK3_chr19_3953453_3976099	0/0	c0002	1365	7	7	0	0	0	0	copy fasta	DAPK3	chr19	3953453	3976099
DAPK3_chr19_3953453_3976099	0/0	c0003	1365	4	0	0	4	0	0	copy fasta	DAPK3	chr19	3953453	3976099
DAPK3_chr19_3953453_3976099	0/0	c0004	1365	1	0	1	0	0	0	copy fasta	DAPK3	chr19	3953453	3976099
DAPK3_chr19_3953453_3976099	0/0	c0005	1383	1	0	0	1	0	0	copy fasta	DAPK3	chr19	3953453	3976099
DAPL1_chr2_158790317_158820990	0/0	c0001	324	164	56	17	72	3	16	copy fasta	DAPL1	chr2	158790317	158820990
DAPL1_chr2_158790317_158820990	1/0	c0002	324	89	33	10	35	1	9	copy fasta	DAPL1	chr2	158790317	158820990
DAPL1_chr2_158790317_158820990	0/1	c0003	324	57	0	11	29	5	11	copy fasta	DAPL1	chr2	158790317	158820990
DAPL1_chr2_158790317_158820990	0/0	c0004	324	27	1	13	3	5	5	copy fasta	DAPL1	chr2	158790317	158820990
DAPL1_chr2_158790317_158820990	0/0	c0005	324	13	0	7	0	3	3	copy fasta	DAPL1	chr2	158790317	158820990
DAPL1_chr2_158790317_158820990	0/0	c0006	324	6	0	6	0	0	0	copy fasta	DAPL1	chr2	158790317	158820990
DAPL1_chr2_158790317_158820990	0/0	c0007	324	1	0	0	1	0	0	copy fasta	DAPL1	chr2	158790317	158820990
DAPL1_chr2_158790317_158820990	0/0	c0008	324	1	0	0	0	1	0	copy fasta	DAPL1	chr2	158790317	158820990
DAPL1_chr2_158790317_158820990	0/0	c0009	324	1	0	0	0	0	1	copy fasta	DAPL1	chr2	158790317	158820990
DAPL1_chr2_158790317_158820990	0/0	c0010	324	1	0	0	0	0	1	copy fasta	DAPL1	chr2	158790317	158820990
DAPP1_chr4_99811827_99875190	1/1	c0001	843	272	56	55	123	8	28	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	c0002	843	90	30	16	35	4	5	copy fasta	DAPP1	chr4	99811827	99875190