JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DAPP1_chr4_99811827_99875190	0/0	c0003	843	1	0	1	0	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	c0004	843	1	0	1	0	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	c0005	843	1	0	1	0	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	c0006	843	1	0	0	0	0	1	copy fasta	DAPP1	chr4	99811827	99875190
DAP_chr5_10674230_10766234	1/1	c0001	309	371	82	68	167	12	40	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	c0002	309	1	0	0	1	0	0	copy fasta	DAP	chr5	10674230	10766234
DARS1_chr2_135900881_135990626	1/1	c0001	1506	352	72	72	165	6	35	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	c0002	1506	18	11	0	4	0	3	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	c0003	1506	3	3	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	c0004	1506	1	1	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	c0005	1506	1	0	0	1	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	c0006	1506	1	1	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	c0007	1506	1	1	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	c0008	1506	1	1	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS2_chr1_173819673_173863546	1/0	c0001	1938	330	75	49	155	14	36	copy fasta	DARS2	chr1	173819673	173863546
DARS2_chr1_173819673_173863546	0/0	c0002	1938	8	8	0	0	0	0	copy fasta	DARS2	chr1	173819673	173863546
DARS2_chr1_173819673_173863546	0/0	c0003	1938	2	2	0	0	0	0	copy fasta	DARS2	chr1	173819673	173863546
DARS2_chr1_173819673_173863546	0/0	c0004	1938	1	0	0	1	0	0	copy fasta	DARS2	chr1	173819673	173863546
DARS2_chr1_173819673_173863546	0/1	c0005	1938	1	0	0	0	0	0	copy fasta	DARS2	chr1	173819673	173863546
DARS2_chr1_173819673_173863546	0/0	c0006	1938	1	0	1	0	0	0	copy fasta	DARS2	chr1	173819673	173863546
DARS2_chr1_173819673_173863546	0/0	c0007	1938	1	1	0	0	0	0	copy fasta	DARS2	chr1	173819673	173863546
DAW1_chr2_227866631_227929344	1/1	c0001	1248	251	43	44	130	7	25	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	c0002	1248	36	15	12	0	4	5	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	c0003	1248	31	10	4	14	1	2	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	c0004	1248	12	12	0	0	0	0	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	c0005	1248	2	0	0	2	0	0	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	c0006	1248	1	0	0	1	0	0	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	c0007	1248	1	0	0	1	0	0	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	c0008	1248	1	1	0	0	0	0	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	c0009	1248	1	0	0	0	0	1	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	c0010	1248	1	1	0	0	0	0	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	c0011	1248	1	1	0	0	0	0	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	c0012	1248	1	1	0	0	0	0	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	c0013	1248	1	0	0	0	0	1	copy fasta	DAW1	chr2	227866631	227929344
DAXX_chr6_33313558_33327959	0/1	c0001	2223	243	70	41	101	7	23	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	c0002	2223	81	1	19	45	7	9	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	c0003	2223	29	23	1	2	0	3	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	c0004	2223	5	0	2	1	0	2	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	c0005	2220	5	0	0	5	0	0	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	c0006	2223	4	0	3	1	0	0	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	c0007	2223	2	2	0	0	0	0	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	c0008	2223	1	1	0	0	0	0	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	c0009	2223	1	1	0	0	0	0	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	c0010	2223	1	1	0	0	0	0	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	c0011	2247	1	0	0	1	0	0	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	c0012	2223	1	1	0	0	0	0	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	c0013	2223	1	0	0	0	0	1	copy fasta	DAXX	chr6	33313558	33327959
DAZ1_chrY_23124355_23204008	1/1	c0001	2235	57	14	12	19	2	8	copy fasta	DAZ1	chrY	23124355	23204008
DAZ1_chrY_23124355_23204008	0/0	c0002	2235	2	0	0	2	0	0	copy fasta	DAZ1	chrY	23124355	23204008
DAZ1_chrY_23124355_23204008	0/0	c0003	1245	1	0	0	1	0	0	copy fasta	DAZ1	chrY	23124355	23204008