JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DAZ1_chrY_23124355_23204008	0/0	c0004	1740	1	0	0	1	0	0	copy fasta	DAZ1	chrY	23124355	23204008
DAZ1_chrY_23124355_23204008	0/0	c0005	2236	1	0	0	0	0	1	copy fasta	DAZ1	chrY	23124355	23204008
DAZ1_chrY_23124355_23204008	0/0	c0006	2235	1	0	0	1	0	0	copy fasta	DAZ1	chrY	23124355	23204008
DAZ2_chrY_23214533_23296356	0/0	c0001	1605	21	1	4	5	2	9	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	c0002	1749	13	12	1	0	0	0	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	c0003	1893	6	0	5	0	1	0	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	1/0	c0004	1965	2	0	0	0	0	1	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/1	c0005	1533	2	0	0	0	0	1	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	c0006	1965	1	0	1	0	0	0	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	c0007	1605	1	0	0	0	1	0	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	c0008	1965	1	0	0	0	0	1	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	c0009	1893	1	1	0	0	0	0	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	c0010	1749	1	0	0	1	0	0	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	c0011	1605	1	1	0	0	0	0	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	c0012	1893	1	1	0	0	0	0	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	c0013	1389	1	0	1	0	0	0	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	c0014	1461	1	1	0	0	0	0	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	c0015	1389	1	0	0	1	0	0	copy fasta	DAZ2	chrY	23214533	23296356
DAZ3_chrY_24758069_24818393	1/0	c0001	1317	18	3	5	5	2	2	copy fasta	DAZ3	chrY	24758069	24818393
DAZ3_chrY_24758069_24818393	0/0	c0002	1101	10	10	0	0	0	0	copy fasta	DAZ3	chrY	24758069	24818393
DAZ3_chrY_24758069_24818393	0/0	c0003	957	6	0	1	4	1	0	copy fasta	DAZ3	chrY	24758069	24818393
DAZ3_chrY_24758069_24818393	0/0	c0004	1173	4	1	2	1	0	0	copy fasta	DAZ3	chrY	24758069	24818393
DAZ3_chrY_24758069_24818393	0/0	c0005	1317	2	0	0	1	0	1	copy fasta	DAZ3	chrY	24758069	24818393
DAZ3_chrY_24758069_24818393	0/0	c0006	1029	2	0	0	2	0	0	copy fasta	DAZ3	chrY	24758069	24818393
DAZ3_chrY_24758069_24818393	0/0	c0007	1101	1	0	0	1	0	0	copy fasta	DAZ3	chrY	24758069	24818393
DAZ3_chrY_24758069_24818393	0/0	c0008	1317	1	0	0	0	1	0	copy fasta	DAZ3	chrY	24758069	24818393
DAZ3_chrY_24758069_24818393	0/0	c0009	1317	1	0	1	0	0	0	copy fasta	DAZ3	chrY	24758069	24818393
DAZ4_chrY_24828919_24912040	0/0	c0001	1884	10	8	2	0	0	0	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	0/0	c0002	1812	9	1	0	5	0	3	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	0/0	c0003	2100	6	0	4	0	1	1	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	0/0	c0004	1740	6	0	1	1	2	2	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	0/0	c0005	1668	2	0	0	2	0	0	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	0/0	c0006	1812	1	0	0	1	0	0	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	0/0	c0007	2172	1	1	0	0	0	0	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	0/0	c0008	1812	1	0	1	0	0	0	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	1/0	c0009	2172	1	0	0	0	0	0	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	0/0	c0010	1812	1	0	0	1	0	0	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	0/0	c0011	1956	1	0	1	0	0	0	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	0/0	c0012	1596	1	0	0	1	0	0	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	0/0	c0013	1812	1	0	0	1	0	0	copy fasta	DAZ4	chrY	24828919	24912040
DAZAP1_chr19_1402586_1440684	1/1	c0001	1224	343	92	72	126	14	37	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	c0002	1224	25	1	2	13	2	7	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	c0003	1224	2	2	0	0	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	c0004	1224	1	0	0	0	0	1	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	c0005	1224	1	0	0	1	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	c0006	1224	1	0	0	0	0	1	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	c0007	1224	1	1	0	0	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP2_chr12_51233826_51248933	1/1	c0001	507	435	95	86	192	18	42	copy fasta	DAZAP2	chr12	51233826	51248933
DAZAP2_chr12_51233826_51248933	0/0	c0002	507	2	2	0	0	0	0	copy fasta	DAZAP2	chr12	51233826	51248933
DAZAP2_chr12_51233826_51248933	0/0	c0003	507	1	1	0	0	0	0	copy fasta	DAZAP2	chr12	51233826	51248933