Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAMTSL1_chr9_18469153_18915950	0/0	c0043	5289	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0044	5289	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0045	5289	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0046	5289	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0047	5289	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0048	5289	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0049	5289	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0050	5289	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0051	5289	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0052	5289	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0053	5289	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0054	5289	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0055	5289	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0056	5289	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0057	5289	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0058	5289	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0059	5289	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0060	5289	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0061	5289	1	0	0	0	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0062	5289	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0063	5289	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0064	5289	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0065	5289	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0066	5289	1	0	0	0	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0067	5289	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	1/0	c0068	5289	1	0	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0069	5289	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0070	5289	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0071	5289	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0072	5289	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0073	5289	1	0	0	0	1	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0074	5289	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0075	5289	1	0	0	0	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0076	5289	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0077	5289	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0078	5289	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0079	5289	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0080	5289	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0081	5289	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	c0082	5289	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL2_chr9_133529704_133580519	0/0	c0001	2856	29	19	5	0	2	3	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0002	2856	23	4	2	13	3	1	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	1/1	c0003	2856	18	0	3	10	0	3	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0004	2856	12	1	2	8	0	1	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0005	2856	10	0	2	3	3	2	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0006	2856	10	7	3	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0007	2856	7	0	3	0	2	2	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0008	2856	4	0	0	1	0	3	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0009	2856	3	3	0	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0010	2856	3	0	0	1	1	1	copy fasta	ADAMTSL2	chr9	133529704	133580519