JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DAZL_chr3_16581792_16610423	1/1	c0001	888	401	81	77	195	12	34	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	c0002	888	33	2	5	19	2	5	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	c0003	888	10	10	0	0	0	0	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	c0004	888	1	0	0	0	0	1	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	c0005	888	1	1	0	0	0	0	copy fasta	DAZL	chr3	16581792	16610423
DBF4B_chr17_44703665_44757264	1/1	c0001	1848	263	74	55	98	10	24	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/0	c0002	1848	8	6	2	0	0	0	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/0	c0003	1848	8	7	1	0	0	0	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/0	c0004	1848	2	2	0	0	0	0	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/0	c0005	1848	2	0	0	2	0	0	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/0	c0006	1848	2	0	0	2	0	0	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/0	c0007	1848	1	0	1	0	0	0	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/0	c0008	1848	1	0	1	0	0	0	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/0	c0009	1848	1	1	0	0	0	0	copy fasta	DBF4B	chr17	44703665	44757264
DBF4_chr7_87871493_87914553	1/1	c0001	2025	228	62	44	84	12	24	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	c0002	2025	39	14	7	16	0	2	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	c0003	2025	12	0	0	12	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	c0004	2025	2	0	0	2	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	c0005	2025	2	0	2	0	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	c0006	2025	1	0	1	0	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	c0007	2025	1	0	1	0	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	c0008	2038	1	0	0	1	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	c0009	2025	1	1	0	0	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	c0010	2025	1	1	0	0	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	c0011	2025	1	0	0	1	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	c0012	2025	1	0	1	0	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	c0013	2025	1	0	0	1	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	c0014	2025	1	0	0	1	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBH_chr9_133631363_133664329	0/0	c0001	1854	180	12	34	111	7	16	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	1/0	c0002	1854	49	15	11	9	2	11	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/1	c0003	1854	35	12	1	20	0	1	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0004	1854	35	13	13	0	4	5	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0005	1854	27	14	7	5	0	1	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0006	1854	11	3	2	4	1	1	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0007	1854	9	6	0	0	0	3	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0008	1854	7	6	1	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0009	1854	5	0	0	5	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0010	1854	5	5	0	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0011	1854	5	0	0	2	0	3	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0012	1854	3	2	1	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0013	1854	3	3	0	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0014	1854	2	0	0	2	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0015	1854	2	2	0	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0016	1854	2	0	0	2	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0017	1854	2	0	2	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0018	1854	2	0	1	0	0	1	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0019	1854	2	0	1	0	0	1	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0020	1854	1	0	0	0	0	1	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0021	1854	1	0	0	1	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0022	1854	1	1	0	0	0	0	copy fasta	DBH	chr9	133631363	133664329