JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DBH_chr9_133631363_133664329	0/0	c0023	1854	1	1	0	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0024	1854	1	0	0	1	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0025	1854	1	0	0	1	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0026	1854	1	0	0	0	0	1	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0027	1854	1	0	1	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0028	1854	1	0	0	1	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0029	1854	1	0	0	1	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0030	1854	1	1	0	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0031	1854	1	1	0	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0032	1854	1	1	0	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0033	1854	1	0	1	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0034	1854	1	0	0	0	0	1	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	c0035	1854	1	0	0	1	0	0	copy fasta	DBH	chr9	133631363	133664329
DBI_chr2_119361977_119377543	1/1	c0001	264	410	90	79	174	18	47	copy fasta	DBI	chr2	119361977	119377543
DBI_chr2_119361977_119377543	0/0	c0002	264	6	0	0	6	0	0	copy fasta	DBI	chr2	119361977	119377543
DBI_chr2_119361977_119377543	0/0	c0003	264	5	0	4	0	0	1	copy fasta	DBI	chr2	119361977	119377543
DBI_chr2_119361977_119377543	0/0	c0004	264	1	0	1	0	0	0	copy fasta	DBI	chr2	119361977	119377543
DBN1_chr5_177451610_177478634	0/0	c0001	2088	189	31	43	85	6	24	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/1	c0002	2088	122	47	26	27	6	15	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	c0003	2088	9	0	2	7	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	c0004	2088	4	3	0	1	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	c0005	2088	4	4	0	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	c0006	2088	2	2	0	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	1/0	c0007	2088	2	1	0	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	c0008	2088	1	1	0	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	c0009	2088	1	1	0	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	c0010	2088	1	0	1	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	c0011	2088	1	1	0	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	c0012	2088	1	0	1	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	c0013	2088	1	1	0	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	c0014	2088	1	1	0	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	c0015	2088	1	0	1	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	c0016	2088	1	0	0	1	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	c0017	2088	1	0	0	0	0	1	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	c0018	2088	1	0	0	1	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	c0019	2088	1	0	0	1	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	c0020	2088	1	0	0	1	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	c0021	2088	1	1	0	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBNDD1_chr16_89999871_90024456	1/1	c0001	477	380	97	74	148	14	45	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	c0002	477	28	0	4	21	0	3	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	c0003	477	2	2	0	0	0	0	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	c0004	477	1	1	0	0	0	0	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	c0005	477	1	0	0	1	0	0	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD2_chr20_45403289_45415607	0/1	c0001	486	308	81	59	121	11	35	copy fasta	DBNDD2	chr20	45403289	45415607
DBNDD2_chr20_45403289_45415607	1/0	c0002	486	102	3	19	69	3	7	copy fasta	DBNDD2	chr20	45403289	45415607
DBNDD2_chr20_45403289_45415607	0/0	c0003	486	4	4	0	0	0	0	copy fasta	DBNDD2	chr20	45403289	45415607
DBNDD2_chr20_45403289_45415607	0/0	c0004	486	1	0	0	1	0	0	copy fasta	DBNDD2	chr20	45403289	45415607
DBNDD2_chr20_45403289_45415607	0/0	c0005	486	1	0	0	1	0	0	copy fasta	DBNDD2	chr20	45403289	45415607
DBNL_chr7_44039702_44074456	1/0	c0001	1293	263	52	48	125	8	29	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/1	c0002	1293	106	36	27	25	6	11	copy fasta	DBNL	chr7	44039702	44074456