JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DBNL_chr7_44039702_44074456	0/0	c0003	1293	4	4	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	c0004	1293	2	0	0	2	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	c0005	1293	1	1	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	c0006	1293	1	0	0	1	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	c0007	1293	1	0	1	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	c0008	1293	1	0	0	1	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	c0009	1293	1	1	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBP_chr19_48625030_48642379	1/1	c0001	978	384	93	78	166	11	34	copy fasta	DBP	chr19	48625030	48642379
DBP_chr19_48625030_48642379	0/0	c0002	978	1	0	0	0	1	0	copy fasta	DBP	chr19	48625030	48642379
DBP_chr19_48625030_48642379	0/0	c0003	978	1	0	1	0	0	0	copy fasta	DBP	chr19	48625030	48642379
DBP_chr19_48625030_48642379	0/0	c0004	978	1	1	0	0	0	0	copy fasta	DBP	chr19	48625030	48642379
DBP_chr19_48625030_48642379	0/0	c0005	978	1	0	1	0	0	0	copy fasta	DBP	chr19	48625030	48642379
DBR1_chr3_138155988_138179921	0/1	c0001	1635	196	43	40	87	9	16	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	1/0	c0002	1635	121	18	13	71	5	13	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	c0003	1635	34	25	6	0	0	3	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	c0004	1635	5	5	0	0	0	0	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	c0005	1635	3	0	0	3	0	0	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	c0006	1635	2	2	0	0	0	0	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	c0007	1635	2	0	0	0	0	2	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	c0008	1635	1	0	1	0	0	0	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	c0009	1635	1	0	0	1	0	0	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	c0010	1635	1	0	0	0	0	1	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	c0011	1635	1	0	0	0	0	1	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	c0012	1635	1	1	0	0	0	0	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	c0013	1635	1	0	0	1	0	0	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	c0014	1635	1	0	0	1	0	0	copy fasta	DBR1	chr3	138155988	138179921
DBT_chr1_100181919_100254834	0/1	c0001	1449	173	47	37	58	8	22	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	1/0	c0002	1449	31	21	4	4	1	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	c0003	1449	10	10	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	c0004	1449	3	0	1	0	1	1	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	c0005	1449	2	2	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	c0006	1449	1	0	0	0	0	1	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	c0007	1449	1	1	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	c0008	1449	1	1	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBX1_chr11_20151155_20165475	1/1	c0001	1032	416	54	67	227	18	48	copy fasta	DBX1	chr11	20151155	20165475
DBX1_chr11_20151155_20165475	0/0	c0002	1032	24	12	8	4	0	0	copy fasta	DBX1	chr11	20151155	20165475
DBX1_chr11_20151155_20165475	0/0	c0003	1032	17	16	1	0	0	0	copy fasta	DBX1	chr11	20151155	20165475
DBX1_chr11_20151155_20165475	0/0	c0004	1029	15	14	1	0	0	0	copy fasta	DBX1	chr11	20151155	20165475
DBX1_chr11_20151155_20165475	0/0	c0005	1032	3	3	0	0	0	0	copy fasta	DBX1	chr11	20151155	20165475
DBX1_chr11_20151155_20165475	0/0	c0006	1032	3	0	3	0	0	0	copy fasta	DBX1	chr11	20151155	20165475
DBX1_chr11_20151155_20165475	0/0	c0007	1032	1	0	0	1	0	0	copy fasta	DBX1	chr11	20151155	20165475
DBX1_chr11_20151155_20165475	0/0	c0008	1032	1	1	0	0	0	0	copy fasta	DBX1	chr11	20151155	20165475
DBX2_chr12_45009672_45056099	0/0	c0001	1020	236	58	49	103	5	21	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	1/1	c0002	1020	101	24	22	43	5	5	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	c0003	1020	49	0	5	41	0	3	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	c0004	1020	9	9	0	0	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	c0005	1020	7	1	0	5	0	1	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	c0006	1020	5	0	0	5	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	c0007	1020	3	3	0	0	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	c0008	1020	2	2	0	0	0	0	copy fasta	DBX2	chr12	45009672	45056099