JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DCAF8L2_chrX_27585344_27754942	0/0	c0020	1899	1	1	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0021	1902	1	1	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0022	1902	1	1	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0023	1884	1	1	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0024	1878	1	1	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0025	1881	1	1	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0026	1884	1	0	1	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0027	1890	1	1	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0028	1896	1	1	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0029	1896	1	1	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0030	1899	1	0	1	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0031	1895	1	0	0	1	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0032	1893	1	1	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0033	1893	1	1	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8_chr1_160210720_160267549	1/1	c0001	1794	314	81	62	129	10	30	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	c0002	1794	15	3	1	11	0	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	c0003	1782	2	0	1	0	1	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	c0004	1794	1	1	0	0	0	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	c0005	1794	1	1	0	0	0	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	c0006	1794	1	1	0	0	0	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	c0007	1794	1	1	0	0	0	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	c0008	1794	1	0	0	0	1	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAKD_chr17_45018344_45056632	1/0	c0001	696	282	70	53	116	11	31	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/1	c0002	696	95	13	23	38	7	13	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	c0003	696	13	0	3	7	0	3	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	c0004	696	7	7	0	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	c0005	696	3	0	0	3	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	c0006	696	2	0	2	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	c0007	696	1	1	0	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	c0008	696	1	0	1	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	c0009	696	1	0	0	0	0	1	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	c0010	696	1	0	0	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	c0011	696	1	0	0	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	c0012	696	1	1	0	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCANP1_chr5_135439214_135452348	0/0	c0000	0	1	0	0	1	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	c0001	735	239	60	42	107	7	23	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	1/1	c0002	735	167	8	37	88	6	26	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	c0003	735	24	20	4	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	c0004	735	13	0	0	13	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	c0005	735	3	3	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	c0006	735	2	2	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	c0007	735	1	0	0	0	0	1	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	c0008	735	1	0	0	0	1	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	c0009	735	1	0	1	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	c0010	735	1	0	0	1	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	c0011	735	1	1	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	c0012	735	1	1	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	c0013	735	1	1	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCBLD1_chr6_117477674_117554797	0/1	c0001	2148	150	24	29	66	4	26	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	1/0	c0002	2148	73	2	13	52	1	4	copy fasta	DCBLD1	chr6	117477674	117554797