JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DCBLD1_chr6_117477674_117554797	0/0	c0003	2148	44	35	3	5	0	1	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0004	2148	27	0	8	19	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0005	2148	21	3	7	5	3	3	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0006	2148	10	9	1	0	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0007	2148	6	0	1	4	0	1	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0008	2148	5	0	0	5	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0009	2145	5	5	0	0	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0010	2148	4	4	0	0	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0011	2148	3	0	1	1	0	1	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0012	2148	3	0	0	3	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0013	2148	2	0	0	2	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0014	2148	2	0	1	0	1	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0015	2148	1	0	0	1	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0016	2148	1	1	0	0	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0017	2148	1	0	0	0	0	1	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0018	2145	1	1	0	0	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0019	2148	1	1	0	0	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0020	2148	1	0	0	0	1	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0021	2148	1	0	0	1	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0022	2148	1	1	0	0	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0023	2148	1	0	0	0	0	1	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0024	2148	1	0	0	1	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0025	2148	1	1	0	0	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0026	2148	1	1	0	0	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0027	2148	1	0	0	1	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0028	2148	1	1	0	0	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	c0029	2148	1	1	0	0	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD2_chr3_98790941_98906695	0/0	c0001	2328	114	8	22	62	2	20	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	1/1	c0002	2328	112	49	17	29	6	9	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	c0003	2328	45	14	4	11	5	11	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	c0004	2328	14	0	1	13	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	c0005	2328	12	4	5	0	2	1	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	c0006	2328	8	0	0	4	1	3	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	c0007	2328	4	0	0	4	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	c0008	2328	4	3	1	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	c0009	2328	3	2	1	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	c0010	2328	2	2	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	c0011	2328	1	0	0	0	0	1	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	c0012	2328	1	0	1	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	c0013	2328	1	1	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	c0014	2328	1	1	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	c0015	2328	1	0	0	0	0	1	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	c0016	2328	1	1	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	c0017	2328	1	1	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	c0018	2328	1	0	1	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	c0019	2328	1	0	0	1	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	c0020	2328	1	0	1	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	c0021	2328	1	0	1	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	c0022	2299	1	0	1	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCC_chr18_52335197_53540899	0/0	c0001	4344	30	6	6	12	3	3	copy fasta	DCC	chr18	52335197	53540899