JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DCC_chr18_52335197_53540899	0/0	c0002	4344	22	13	5	4	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0003	4344	21	7	5	4	1	4	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0004	4344	6	3	1	0	1	1	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0005	4344	5	4	1	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0006	4344	5	5	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0007	4344	4	0	3	0	1	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0008	4344	3	0	3	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0009	4344	2	0	0	0	0	2	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0010	4344	1	0	1	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0011	4344	1	0	1	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0012	4344	1	1	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0013	4344	1	0	0	0	0	1	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0014	4344	1	1	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0015	4344	1	1	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0016	4344	1	0	1	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0017	4344	1	0	0	0	0	1	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0018	4344	1	0	1	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0019	4344	1	1	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0020	4344	1	1	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0021	4344	1	1	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0022	4344	1	1	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0023	4344	1	1	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0024	4344	1	1	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	c0025	4344	1	1	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCDC1_chr11_30858603_31374739	0/1	c0001	5361	37	14	4	14	0	4	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0002	5361	26	0	7	14	2	3	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0003	5361	21	6	8	2	1	4	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0004	5361	13	11	2	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0005	5361	6	6	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0006	5361	6	6	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0007	5361	6	1	3	0	1	1	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0008	5361	5	1	0	3	0	1	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0009	5361	4	0	2	2	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0010	5361	2	1	1	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0011	5361	2	2	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0012	5361	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0013	5361	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0014	5361	1	0	0	1	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0015	5361	1	0	1	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0016	5361	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0017	5361	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0018	5361	1	0	0	1	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0019	5361	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0020	5361	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0021	5361	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0022	5361	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0023	5361	1	0	1	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0024	5361	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0025	5361	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0026	5361	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739