Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAMTSL2_chr9_133529704_133580519	0/0	c0011	2856	3	0	2	0	1	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0012	2856	2	0	0	2	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0013	2856	2	2	0	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0014	2856	2	0	1	0	0	1	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0015	2856	2	0	0	2	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0016	2856	1	1	0	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0017	2856	1	0	0	1	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0018	2856	1	0	0	0	0	1	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0019	2856	1	1	0	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0020	2856	1	0	1	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0021	2856	1	1	0	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0022	2856	1	1	0	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0023	2856	1	1	0	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0024	2856	1	0	0	0	1	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0025	2856	1	0	0	0	0	1	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0026	2856	1	1	0	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0027	2856	1	1	0	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0028	2856	1	1	0	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0029	2856	1	0	0	0	0	1	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0030	2856	1	0	0	0	1	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0031	2856	1	0	1	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0032	2856	1	1	0	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0033	2856	1	0	0	1	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0034	2856	1	0	1	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0035	2856	1	1	0	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0036	2856	1	1	0	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	c0037	2856	1	1	0	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL3_chr15_83649123_84044842	0/1	c0001	5076	53	6	2	39	2	3	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0002	5076	40	11	9	14	0	6	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0003	5076	31	1	1	25	3	1	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0004	5076	25	1	5	14	3	2	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0005	5076	13	0	6	2	2	3	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	1/0	c0006	5076	11	0	2	2	1	5	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0007	5076	9	9	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0008	5076	7	5	1	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0009	5076	5	1	2	0	2	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0010	5076	5	5	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0011	5076	4	0	4	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0012	5076	4	4	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0013	5076	3	0	0	3	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0014	5076	3	0	2	0	0	1	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0015	5076	3	3	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0016	5076	3	3	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0017	5076	2	0	0	0	1	1	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0018	5076	2	0	1	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0019	5076	2	0	0	2	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0020	5076	2	2	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0021	5064	2	2	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0022	5076	2	2	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0023	5076	1	0	0	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842