JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DCDC1_chr11_30858603_31374739	0/0	c0027	5361	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0028	5361	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0029	5361	1	0	1	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0030	5361	1	0	0	0	0	1	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0031	5752	1	0	0	0	0	1	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0032	5361	1	0	0	0	0	1	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0033	5361	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	1/0	c0034	5361	1	0	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	c0035	5361	1	0	0	1	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC2B_chr1_32204089_32221192	1/1	c0001	1050	392	91	63	185	13	38	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2B_chr1_32204089_32221192	0/0	c0002	1050	2	0	1	0	0	1	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2B_chr1_32204089_32221192	0/0	c0003	1050	1	0	0	0	0	1	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2B_chr1_32204089_32221192	0/0	c0004	1050	1	0	0	1	0	0	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2B_chr1_32204089_32221192	0/0	c0005	1050	1	0	1	0	0	0	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2B_chr1_32204089_32221192	0/0	c0006	1050	1	0	0	1	0	0	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2B_chr1_32204089_32221192	0/0	c0007	1050	1	0	0	0	1	0	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2B_chr1_32204089_32221192	0/0	c0008	1050	1	0	0	1	0	0	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2B_chr1_32204089_32221192	0/0	c0009	1050	1	0	1	0	0	0	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2B_chr1_32204089_32221192	0/0	c0010	1050	1	1	0	0	0	0	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2B_chr1_32204089_32221192	0/0	c0011	1050	1	1	0	0	0	0	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2B_chr1_32204089_32221192	0/0	c0012	1050	1	1	0	0	0	0	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2C_chr2_3698575_3853008	0/1	c0001	1095	137	12	33	70	4	17	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	1/0	c0002	1095	95	36	19	27	4	8	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	c0003	1095	33	15	3	13	1	1	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	c0004	1095	23	3	1	17	1	1	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	c0005	1095	12	11	1	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	c0006	1095	10	9	1	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	c0007	1095	4	0	0	4	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	c0008	1095	2	0	1	0	0	1	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	c0009	1095	2	0	2	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	c0010	1095	2	2	0	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	c0011	1082	1	0	0	1	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	c0012	1095	1	0	1	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	c0013	1095	1	1	0	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	c0014	1095	1	1	0	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2_chr6_24166755_24363059	0/0	c0001	1431	81	6	21	41	0	13	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	c0002	1431	67	25	9	20	1	12	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	c0003	1431	39	35	4	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	c0004	1431	10	2	3	3	1	1	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	c0005	1431	3	0	0	1	0	2	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	c0006	1431	2	1	1	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	c0007	1431	2	0	1	1	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	c0008	1431	2	2	0	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	c0009	1431	2	0	1	0	0	1	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	c0010	1431	1	0	0	1	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	c0011	1431	1	0	0	1	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	c0012	1431	1	1	0	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	c0013	1431	1	1	0	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	c0014	1431	1	1	0	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	c0015	1431	1	0	1	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059