JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DCDC2_chr6_24166755_24363059	0/0	c0016	1431	1	0	0	0	0	1	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	c0017	1431	1	0	1	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCD_chr12_54639589_54653365	1/1	c0001	333	421	98	72	193	12	44	copy fasta	DCD	chr12	54639589	54653365
DCD_chr12_54639589_54653365	0/0	c0002	333	2	0	0	2	0	0	copy fasta	DCD	chr12	54639589	54653365
DCD_chr12_54639589_54653365	0/0	c0003	333	2	2	0	0	0	0	copy fasta	DCD	chr12	54639589	54653365
DCD_chr12_54639589_54653365	0/0	c0004	333	1	0	0	0	1	0	copy fasta	DCD	chr12	54639589	54653365
DCD_chr12_54639589_54653365	0/0	c0005	333	1	0	0	1	0	0	copy fasta	DCD	chr12	54639589	54653365
DCD_chr12_54639589_54653365	0/0	c0006	333	1	0	0	0	1	0	copy fasta	DCD	chr12	54639589	54653365
DCHS1_chr11_6616330_6660809	1/1	c0001	9897	90	15	23	36	3	11	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0002	9900	45	2	9	23	1	10	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0003	9897	44	4	10	23	0	7	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0004	9897	35	8	11	11	2	3	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0005	9897	21	0	1	20	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0006	9897	13	7	2	0	0	4	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0007	9897	8	0	5	0	3	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0008	9897	7	6	1	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0009	9900	5	0	2	3	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0010	9897	5	0	0	5	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0011	9897	5	5	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0012	9897	4	4	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0013	9897	3	3	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0014	9897	3	3	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0015	9897	3	3	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0016	9897	3	3	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0017	9897	3	0	0	3	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0018	9897	3	0	0	3	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0019	9897	3	3	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0020	9897	2	2	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0021	9897	2	0	2	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0022	9897	2	0	0	0	0	2	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0023	9897	2	0	1	0	0	1	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0024	9897	2	2	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0025	9897	2	0	0	2	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0026	9897	2	2	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0027	9897	2	0	1	0	0	1	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0028	9900	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0029	9900	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0030	9900	1	0	1	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0031	9900	1	0	0	0	0	1	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0032	9900	1	0	1	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0033	9897	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0034	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0035	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0036	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0037	9897	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0038	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0039	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0040	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0041	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0042	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809