JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DCHS1_chr11_6616330_6660809	0/0	c0043	9897	1	0	0	0	0	1	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0044	9897	1	0	1	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0045	9897	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0046	9897	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0047	9897	1	0	1	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0048	9897	1	0	1	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0049	9897	1	0	1	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0050	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0051	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0052	9897	1	0	0	0	0	1	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0053	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0054	9897	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0055	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0056	9897	1	0	1	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0057	9897	1	0	0	0	0	1	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0058	9897	1	0	0	0	1	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0059	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0060	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0061	9897	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0062	9897	1	0	1	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0063	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0064	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0065	9897	1	0	0	0	0	1	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0066	9897	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0067	9897	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0068	9897	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0069	9897	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0070	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0071	9897	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0072	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0073	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0074	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0075	9897	1	0	0	0	0	1	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0076	9897	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0077	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0078	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0079	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0080	9897	1	0	0	0	0	1	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0081	9897	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	c0082	9897	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS2_chr4_154226742_154496799	0/0	c0001	10116	14	2	3	7	0	2	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0002	10116	11	0	5	2	0	4	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0003	10116	5	0	5	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0004	10116	5	1	3	1	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/1	c0005	10116	4	0	2	0	0	1	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0006	10116	3	0	2	0	0	1	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0007	10116	3	0	1	1	0	1	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0008	10116	3	0	0	3	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0009	10116	3	3	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0010	10116	3	0	0	1	0	2	copy fasta	DCHS2	chr4	154226742	154496799