JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DCHS2_chr4_154226742_154496799	0/0	c0111	10116	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0112	10116	1	0	1	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0113	10116	1	0	0	0	1	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0114	10116	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0115	10116	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0116	10116	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0117	10116	1	0	0	1	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0118	10116	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0119	10116	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0120	10116	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0121	10116	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0122	10116	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	1/0	c0123	10116	1	0	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0124	10116	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0125	10116	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0126	10116	1	0	1	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0127	10116	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	c0128	10116	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCK_chr4_70988649_71035914	1/0	c0001	783	254	83	53	77	8	32	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/0	c0002	783	16	2	1	11	0	2	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/1	c0003	783	6	1	2	0	2	0	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/0	c0004	783	2	2	0	0	0	0	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/0	c0005	783	2	2	0	0	0	0	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/0	c0006	783	1	0	0	0	1	0	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/0	c0007	783	1	0	0	0	1	0	copy fasta	DCK	chr4	70988649	71035914
DCLK1_chr13_35763652_36136382	1/0	c0001	2223	74	26	6	30	1	10	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	c0002	2223	41	17	7	7	6	4	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/1	c0003	2223	36	4	12	12	4	3	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	c0004	2223	23	10	3	8	1	1	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	c0005	2223	14	2	5	2	2	3	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	c0006	2223	14	4	4	5	0	1	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	c0007	2223	8	2	0	4	0	2	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	c0008	2223	5	2	2	0	0	1	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	c0009	2223	4	1	0	2	0	1	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	c0010	2223	1	0	1	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	c0011	2223	1	0	0	0	0	1	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	c0012	2223	1	0	1	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	c0013	2223	1	0	0	0	0	1	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	c0014	2223	1	0	1	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	c0015	2223	1	1	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	c0016	2223	1	1	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	c0017	2223	1	0	1	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	c0018	2223	1	1	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	c0019	2223	1	0	1	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	c0020	2223	1	1	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK2_chr4_150073445_150262438	0/1	c0001	2301	74	28	13	18	2	12	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	1/0	c0002	2301	11	4	0	6	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	c0003	2301	10	10	0	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	c0004	2302	6	1	2	1	0	2	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	c0005	2301	5	5	0	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438