JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DCLK2_chr4_150073445_150262438	0/0	c0006	2301	3	0	1	2	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	c0007	2301	3	2	1	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	c0008	2301	1	1	0	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	c0009	2301	1	1	0	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	c0010	2372	1	0	1	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	c0011	2301	1	0	0	1	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK3_chr3_36707421_36769553	1/0	c0001	2454	247	50	41	126	12	17	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/1	c0002	2454	75	10	14	38	1	11	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	c0003	2454	45	15	11	16	0	3	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	c0004	2454	10	1	3	0	1	5	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	c0005	2454	8	0	0	8	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	c0006	2454	5	0	5	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	c0007	2454	5	0	4	0	1	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	c0008	2454	4	0	0	0	0	4	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	c0009	2454	4	0	0	4	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	c0010	2454	3	3	0	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	c0011	2454	3	0	0	0	0	3	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	c0012	2454	2	2	0	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	c0013	2454	2	1	1	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	c0014	2454	1	0	0	0	1	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	c0015	2454	1	0	0	1	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	c0016	2454	1	0	0	1	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	c0017	2454	1	0	0	1	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	c0018	2454	1	0	1	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	c0019	2454	1	0	0	0	0	1	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	c0020	2454	1	0	0	0	0	1	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	c0021	2454	1	0	0	0	0	1	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	c0022	2454	1	0	0	1	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLRE1A_chr10_113829725_113859082	0/1	c0001	3123	244	34	53	115	14	27	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	1/0	c0002	3123	130	38	17	61	2	11	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	c0003	3123	9	9	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	c0004	3123	3	3	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	c0005	3123	2	2	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	c0006	3123	2	0	2	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	c0007	3123	1	1	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	c0008	3123	1	1	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	c0009	3123	1	0	0	1	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	c0010	3123	1	1	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	c0011	3123	1	1	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	c0012	3123	1	1	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	c0013	3123	1	0	0	1	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	c0014	3123	1	0	0	0	0	1	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	c0015	3123	1	1	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	c0016	3123	1	0	0	0	0	1	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1B_chr1_113900326_113919086	1/1	c0001	1599	279	83	49	95	10	40	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	c0002	1599	155	3	28	110	6	8	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	c0003	1599	3	3	0	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	c0004	1599	3	0	0	3	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	c0005	1599	2	2	0	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	c0006	1599	1	0	0	1	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086