JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DCLRE1B_chr1_113900326_113919086	0/0	c0007	1599	1	1	0	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	c0008	1599	1	0	0	1	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	c0009	1599	1	0	1	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1C_chr10_14899613_14959096	0/0	c0001	2079	160	42	15	77	5	21	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	1/1	c0002	2079	109	11	28	48	5	15	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	c0003	2079	56	17	3	34	0	2	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	c0004	2079	40	11	11	11	1	6	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	c0005	2079	10	1	7	1	0	1	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	c0006	2079	4	3	1	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	c0007	2079	3	2	1	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	c0008	2079	1	1	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	c0009	2079	1	0	0	0	1	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	c0010	2079	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	c0011	2079	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	c0012	2079	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	c0013	2079	1	1	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	c0014	2079	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	c0015	2079	1	1	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	c0016	2079	1	0	0	0	0	1	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	c0017	2079	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCN_chr12_91135484_91187817	1/1	c0001	1080	217	67	38	88	4	18	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	c0002	1080	8	7	1	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	c0003	1080	4	3	1	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	c0004	1080	3	3	0	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	c0005	1080	2	0	2	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	c0006	1080	1	1	0	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	c0007	1080	1	1	0	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCP1A_chr3_53278429_53352543	1/1	c0001	1749	220	37	34	122	8	17	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	c0002	1749	118	31	23	35	6	23	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	c0003	1749	8	0	5	3	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	c0004	1749	7	6	1	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	c0005	1749	6	6	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	c0006	1749	2	1	1	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	c0007	1749	1	1	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	c0008	1749	1	0	0	0	0	1	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	c0009	1749	1	1	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	c0010	1749	1	1	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	c0011	1749	1	0	0	0	0	1	copy fasta	DCP1A	chr3	53278429	53352543
DCP1B_chr12_1941053_2009457	0/0	c0001	1857	204	34	35	110	8	17	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	1/1	c0002	1854	119	30	24	40	7	16	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	c0003	1854	8	8	0	0	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	c0004	1857	6	0	0	6	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	c0005	1857	6	6	0	0	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	c0006	1857	6	6	0	0	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	c0007	1857	6	0	0	6	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	c0008	1857	5	5	0	0	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	c0009	1860	5	0	1	3	0	1	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	c0010	1854	3	0	2	0	0	1	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	c0011	1854	2	2	0	0	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	c0012	1854	1	1	0	0	0	0	copy fasta	DCP1B	chr12	1941053	2009457