JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DCST1_chr1_155028824_155055930	0/0	c0019	2121	1	0	0	0	0	1	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	c0020	2121	1	0	0	1	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST2_chr1_155013527_155038781	0/0	c0001	2322	199	38	37	101	5	18	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	1/1	c0002	2322	106	42	21	11	8	22	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0003	2322	6	0	0	6	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0004	2322	4	3	1	0	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0005	2322	3	3	0	0	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0006	2322	2	0	2	0	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0007	2322	2	0	0	2	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0008	2322	2	0	1	0	0	1	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0009	2322	2	0	0	2	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0010	2322	1	0	0	1	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0011	2322	1	0	0	0	1	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0012	2322	1	0	1	0	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0013	2322	1	0	0	0	0	1	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0014	2322	1	0	0	1	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0015	2322	1	0	1	0	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0016	2322	1	0	1	0	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0017	2322	1	0	0	1	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0018	2322	1	0	0	0	0	1	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0019	2322	1	0	0	1	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0020	2322	1	0	0	0	0	1	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0021	2322	1	0	1	0	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0022	2322	1	1	0	0	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0023	2322	1	0	1	0	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0024	2322	1	0	1	0	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	c0025	2322	1	1	0	0	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCSTAMP_chr8_104334826_104361689	1/1	c0001	1413	326	66	49	162	11	36	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	c0002	1413	47	9	18	14	1	5	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	c0003	1413	17	5	3	7	1	1	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	c0004	1413	11	11	0	0	0	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	c0005	1413	11	0	0	11	0	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	c0006	1413	4	4	0	0	0	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	c0007	1413	3	0	2	0	0	1	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	c0008	1413	3	3	0	0	0	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	c0009	1413	2	2	0	0	0	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	c0010	1413	2	0	0	1	0	1	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	c0011	1413	1	0	0	1	0	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	c0012	1413	1	0	1	0	0	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	c0013	1413	1	0	1	0	0	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	c0014	1413	1	0	0	1	0	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	c0015	1413	1	0	0	0	1	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	c0016	1413	1	0	0	0	0	1	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	c0017	1413	1	0	0	0	0	1	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	c0018	1413	1	0	0	1	0	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCTD_chr4_182885091_182922386	1/1	c0001	537	262	46	50	125	7	32	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	c0002	537	101	37	18	37	5	4	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	c0003	537	11	11	0	0	0	0	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	c0004	537	1	1	0	0	0	0	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	c0005	537	1	1	0	0	0	0	copy fasta	DCTD	chr4	182885091	182922386