Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCA12_chr2_214926542_215143626	0/0	c0020	7788	3	3	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0021	7788	2	0	1	1	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0022	7788	2	2	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0023	7788	2	0	1	1	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0024	7788	2	0	2	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0025	7788	2	1	0	0	0	1	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0026	7788	2	0	2	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0027	7788	2	1	1	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0028	7788	2	2	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0029	7788	1	0	0	1	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0030	7788	1	0	1	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0031	7788	1	0	0	0	1	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0032	7788	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0033	7788	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0034	7788	1	0	1	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0035	7788	1	0	1	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0036	7788	1	0	1	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0037	7788	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0038	7788	1	0	0	1	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0039	7788	1	0	1	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0040	7788	1	0	0	1	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0041	7788	1	0	0	1	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0042	7788	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0043	7788	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0044	7788	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0045	7788	1	0	0	1	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0046	7788	1	0	0	0	0	1	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0047	7788	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0048	7788	1	0	0	0	0	1	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0049	7788	1	0	0	0	0	1	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	1/0	c0050	7788	1	0	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0051	7788	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0052	7788	1	0	0	0	0	1	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0053	7788	1	0	0	1	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0054	7788	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0055	7788	1	0	0	0	0	1	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0056	7788	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0057	7788	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0058	7788	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0059	7788	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0060	7788	1	0	1	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0061	7788	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0062	7788	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0063	7788	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0064	7788	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0065	7788	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0066	7788	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0067	7788	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0068	7788	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA13_chr7_48166458_48652497	0/0	c0001	15177	16	3	1	9	0	3	copy fasta	ABCA13	chr7	48166458	48652497