Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAMTSL3_chr15_83649123_84044842	0/0	c0024	5076	1	0	0	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0025	5076	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0026	5076	1	0	0	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0027	5076	1	0	0	0	1	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0028	5076	1	0	0	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0029	5076	1	0	0	0	0	1	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0030	5076	1	0	0	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0031	5076	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0032	5076	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0033	5076	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0034	5076	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0035	5076	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0036	5076	1	0	1	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0037	5076	1	0	1	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0038	5076	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0039	5076	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0040	5076	1	0	0	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0041	5076	1	0	0	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0042	5076	1	0	0	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0043	5076	1	0	0	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0044	5076	1	0	0	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0045	5076	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0046	5076	1	0	0	0	1	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0047	5076	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0048	5076	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0049	5076	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0050	5076	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0051	5076	1	0	1	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0052	5076	1	0	0	0	0	1	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0053	5076	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0054	5076	1	0	1	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0055	5076	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0056	5076	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0057	5076	1	0	0	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0058	5076	1	0	1	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0059	5076	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0060	5076	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0061	5076	1	0	1	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0062	5076	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0063	5076	1	0	1	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0064	5076	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	c0065	5076	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL4_chr1_150544408_150565933	0/0	c0001	3225	134	15	34	58	7	20	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/1	c0002	3225	67	8	10	39	1	8	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	c0003	3225	54	3	8	30	4	9	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	c0004	3225	30	0	10	19	0	1	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	c0005	3225	21	11	1	8	0	1	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	c0006	3225	20	10	1	6	0	3	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	c0007	3225	11	0	0	11	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	c0008	3225	9	0	1	8	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933