JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DCTN1_chr2_74356155_74385311	1/1	c0001	3837	338	73	57	172	8	26	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	c0002	3837	13	12	1	0	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	c0003	3837	6	0	0	6	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	c0004	3837	4	4	0	0	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	c0005	3837	2	2	0	0	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	c0006	3837	2	0	0	2	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	c0007	3837	2	0	0	2	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	c0008	3837	1	0	0	1	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	c0009	3837	1	0	1	0	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	c0010	3837	1	0	1	0	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	c0011	3837	1	0	1	0	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	c0012	3837	1	0	1	0	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	c0013	3837	1	1	0	0	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	c0014	3837	1	0	0	0	0	1	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	c0015	3837	1	0	0	0	1	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	c0016	3837	1	0	0	1	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	c0017	3837	1	1	0	0	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	c0018	3837	1	0	1	0	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	c0019	3837	1	0	0	0	0	1	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	c0020	3837	1	1	0	0	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	c0021	3837	1	0	1	0	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	c0022	3837	1	0	0	0	1	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN2_chr12_57525051_57552192	1/1	c0001	1206	294	86	56	110	8	32	copy fasta	DCTN2	chr12	57525051	57552192
DCTN2_chr12_57525051_57552192	0/0	c0002	1206	51	0	0	50	0	1	copy fasta	DCTN2	chr12	57525051	57552192
DCTN2_chr12_57525051_57552192	0/0	c0003	1206	4	1	0	0	0	3	copy fasta	DCTN2	chr12	57525051	57552192
DCTN2_chr12_57525051_57552192	0/0	c0004	1206	1	0	0	1	0	0	copy fasta	DCTN2	chr12	57525051	57552192
DCTN2_chr12_57525051_57552192	0/0	c0005	1206	1	1	0	0	0	0	copy fasta	DCTN2	chr12	57525051	57552192
DCTN2_chr12_57525051_57552192	0/0	c0006	1202	1	0	0	1	0	0	copy fasta	DCTN2	chr12	57525051	57552192
DCTN3_chr9_34608546_34625495	1/1	c0001	561	421	95	81	185	16	42	copy fasta	DCTN3	chr9	34608546	34625495
DCTN3_chr9_34608546_34625495	0/0	c0002	561	5	0	0	5	0	0	copy fasta	DCTN3	chr9	34608546	34625495
DCTN3_chr9_34608546_34625495	0/0	c0003	561	1	0	1	0	0	0	copy fasta	DCTN3	chr9	34608546	34625495
DCTN3_chr9_34608546_34625495	0/0	c0004	561	1	1	0	0	0	0	copy fasta	DCTN3	chr9	34608546	34625495
DCTN4_chr5_150703440_150764017	1/1	c0001	1383	147	28	31	60	0	26	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	c0002	1383	104	55	11	32	0	6	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	c0003	1383	14	0	0	14	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	c0004	1383	7	5	2	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	c0005	1383	7	7	0	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	c0006	1383	3	0	0	3	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	c0007	1383	1	1	0	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	c0008	1383	1	0	1	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	c0009	1383	1	0	1	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	c0010	1383	1	0	0	1	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN5_chr16_23636466_23682472	1/1	c0001	549	168	43	33	69	9	12	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	c0002	549	102	9	10	67	4	12	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	c0003	549	44	20	17	2	1	4	copy fasta	DCTN5	chr16	23636466	23682472
DCTN6_chr8_30151369_30188639	1/1	c0001	573	389	91	62	188	10	36	copy fasta	DCTN6	chr8	30151369	30188639
DCTN6_chr8_30151369_30188639	0/0	c0002	573	2	0	0	0	0	2	copy fasta	DCTN6	chr8	30151369	30188639
DCTN6_chr8_30151369_30188639	0/0	c0003	573	1	1	0	0	0	0	copy fasta	DCTN6	chr8	30151369	30188639
DCTPP1_chr16_30418615_30435030	1/1	c0001	513	366	86	78	140	14	46	copy fasta	DCTPP1	chr16	30418615	30435030
DCTPP1_chr16_30418615_30435030	0/0	c0002	513	2	0	0	2	0	0	copy fasta	DCTPP1	chr16	30418615	30435030