JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DCTPP1_chr16_30418615_30435030	0/0	c0003	513	1	0	0	1	0	0	copy fasta	DCTPP1	chr16	30418615	30435030
DCTPP1_chr16_30418615_30435030	0/0	c0004	513	1	0	0	1	0	0	copy fasta	DCTPP1	chr16	30418615	30435030
DCT_chr13_94431811_94484682	1/1	c0001	1560	314	81	57	114	18	42	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	c0002	1560	5	5	0	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	c0003	1560	4	4	0	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	c0004	1560	2	2	0	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	c0005	1560	2	1	1	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	c0006	1560	1	0	0	1	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	c0007	1560	1	0	1	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	c0008	1560	1	0	0	1	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	c0009	1560	1	0	0	0	0	1	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	c0010	1560	1	0	1	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	c0011	1560	1	0	0	1	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	c0012	1560	1	1	0	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	c0013	1560	1	0	0	1	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	c0014	1560	1	0	0	0	0	1	copy fasta	DCT	chr13	94431811	94484682
DCUN1D1_chr3_182933074_182985538	0/1	c0001	780	173	60	41	45	10	16	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	1/0	c0002	780	152	28	17	86	4	16	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	c0003	780	1	0	0	1	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D2_chr13_113450819_113495711	1/1	c0001	780	337	87	70	137	9	32	copy fasta	DCUN1D2	chr13	113450819	113495711
DCUN1D2_chr13_113450819_113495711	0/0	c0002	780	22	0	0	20	1	1	copy fasta	DCUN1D2	chr13	113450819	113495711
DCUN1D2_chr13_113450819_113495711	0/0	c0003	780	3	0	0	1	0	2	copy fasta	DCUN1D2	chr13	113450819	113495711
DCUN1D2_chr13_113450819_113495711	0/0	c0004	780	1	1	0	0	0	0	copy fasta	DCUN1D2	chr13	113450819	113495711
DCUN1D2_chr13_113450819_113495711	0/0	c0005	780	1	0	0	0	0	1	copy fasta	DCUN1D2	chr13	113450819	113495711
DCUN1D3_chr16_20849925_20905358	1/1	c0001	915	194	37	31	104	6	14	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	c0002	915	176	43	31	66	10	26	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	c0003	915	6	6	0	0	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	c0004	915	1	0	0	0	0	1	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	c0005	915	1	0	0	0	0	1	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D4_chr4_51838153_51921837	1/1	c0001	879	260	75	48	93	10	32	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	c0002	879	1	1	0	0	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	c0003	879	1	0	0	1	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D5_chr11_103045686_103097160	1/1	c0001	714	317	82	66	132	8	27	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	c0002	714	1	0	0	0	0	1	copy fasta	DCUN1D5	chr11	103045686	103097160
DCXR_chr17_82030858_82042697	1/1	c0001	735	299	41	64	139	11	42	copy fasta	DCXR	chr17	82030858	82042697
DCXR_chr17_82030858_82042697	0/0	c0002	735	75	44	10	16	4	1	copy fasta	DCXR	chr17	82030858	82042697
DCXR_chr17_82030858_82042697	0/0	c0003	735	36	0	6	28	1	1	copy fasta	DCXR	chr17	82030858	82042697
DCXR_chr17_82030858_82042697	0/0	c0004	735	6	6	0	0	0	0	copy fasta	DCXR	chr17	82030858	82042697
DCXR_chr17_82030858_82042697	0/0	c0005	735	3	3	0	0	0	0	copy fasta	DCXR	chr17	82030858	82042697
DCXR_chr17_82030858_82042697	0/0	c0006	735	1	0	0	1	0	0	copy fasta	DCXR	chr17	82030858	82042697
DCXR_chr17_82030858_82042697	0/0	c0007	735	1	0	0	1	0	0	copy fasta	DCXR	chr17	82030858	82042697
DCXR_chr17_82030858_82042697	0/0	c0008	735	1	0	0	1	0	0	copy fasta	DCXR	chr17	82030858	82042697
DCX_chrX_111288779_111417192	1/1	c0001	1101	181	68	23	67	5	16	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	c0002	1101	1	1	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	c0003	1098	1	0	0	1	0	0	copy fasta	DCX	chrX	111288779	111417192
DDA1_chr19_17304563_17328298	1/1	c0001	309	387	92	81	156	16	40	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	c0002	309	1	0	1	0	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDAH1_chr1_85313485_85470159	1/1	c0001	858	371	93	60	166	11	39	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	c0002	858	44	2	14	20	3	5	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	c0003	858	1	1	0	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159